FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2749, 213 aa
  1>>>pF1KE2749     213 - 213 aa - 213 aa
Library: /omim/omim.rfq.tfa
  65951994 residues in 93482 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6905+/-0.00028; mu= 18.0611+/- 0.017
 mean_var=75.1892+/-15.627, 0's: 0 Z-trim(119.1): 29  B-trim: 1956 in 1/56
 Lambda= 0.147910
 statistics sampled from 34280 (34311) to 34280 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.731), E-opt: 0.2 (0.367), width:  16
 Scan time:  3.190

The best scores are:                                      opt bits E(93482)
NP_002557 (OMIM: 602697) P2Y purinoceptor 11 [Homo ( 374) 1455 319.3 5.8e-87
NP_002554 (OMIM: 601167) P2Y purinoceptor 1 [Homo  ( 373)  159 42.7   0.001


>>NP_002557 (OMIM: 602697) P2Y purinoceptor 11 [Homo sap  (374 aa)
 initn: 1455 init1: 1455 opt: 1455  Z-score: 1682.9  bits: 319.3 E(93482): 5.8e-87
Smith-Waterman score: 1455; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:162-374)

                                             10        20        30
pF1KE2                               MPTLSFSHLKRPQQGAGNCSVARPEACIKC
                                     ::::::::::::::::::::::::::::::
NP_002 VHPFFARSHLRPKHAWAVSAAGWVLAALLAMPTLSFSHLKRPQQGAGNCSVARPEACIKC
             140       150       160       170       180       190 

               40        50        60        70        80        90
pF1KE2 LGTADHGLAAYRAYSLVLAGLGCGLPLLLTLAAYGALGRAVLRSPGMTVAEKLRVAALVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LGTADHGLAAYRAYSLVLAGLGCGLPLLLTLAAYGALGRAVLRSPGMTVAEKLRVAALVA
             200       210       220       230       240       250 

              100       110       120       130       140       150
pF1KE2 SGVALYASSYVPYHIMRVLNVDARRRWSTRCPSFADIAQATAALELGPYVGYQVMRGLMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SGVALYASSYVPYHIMRVLNVDARRRWSTRCPSFADIAQATAALELGPYVGYQVMRGLMP
             260       270       280       290       300       310 

              160       170       180       190       200       210
pF1KE2 LAFCVHPLLYMAAVPSLGCCCRHCPGYRDSWNPEDAKSTGQALPLNATAAPKPSEPQSRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LAFCVHPLLYMAAVPSLGCCCRHCPGYRDSWNPEDAKSTGQALPLNATAAPKPSEPQSRE
             320       330       340       350       360       370 

          
pF1KE2 LSQ
       :::
NP_002 LSQ
          

>>NP_002554 (OMIM: 601167) P2Y purinoceptor 1 [Homo sapi  (373 aa)
 initn: 215 init1: 140 opt: 159  Z-score: 188.3  bits: 42.7 E(93482): 0.001
Smith-Waterman score: 211; 32.9% identity (58.7% similar) in 143 aa overlap (23-163:195-327)

                       10        20        30         40         50
pF1KE2         MPTLSFSHLKRPQQGAGNCSVARPEACIKCLGT-ADHGLAAYRAYSL-VLAG
                                     : .  : :  : .:. : .:  ::. . ..
NP_002 KKNAICISVLVWLIVVVAISPILFYSGTGVRKNKTITCYDTTSDEYLRSYFIYSMCTTVA
          170       180       190       200       210       220    

               60        70        80        90       100       110
pF1KE2 LGCGLPLLLTLAAYGALGRAVLRSPGMTVAEKLRVAALVASGVALYASSYVPYHIMRVLN
       . : .::.: :. :: . ::.. .   .   . .   ::   ....: ::.:.:.:...:
NP_002 MFC-VPLVLILGCYGLIVRALIYKDLDNSPLRRKSIYLVIIVLTVFAVSYIPFHVMKTMN
           230       240       250       260       270       280   

              120       130       140       150       160       170
pF1KE2 VDARRRWSTRCPSFADIAQATAALELGPYVGYQVMRGLMPLAFCVHPLLYMAAVPSLGCC
       . ::  ..:  :       :  :..   :. ::: :::  :  :: :.::. :       
NP_002 LRARLDFQT--P-------AMCAFNDRVYATYQVTRGLASLNSCVDPILYFLAGDTFRRR
           290                300       310       320       330    

              180       190       200       210   
pF1KE2 CRHCPGYRDSWNPEDAKSTGQALPLNATAAPKPSEPQSRELSQ
                                                  
NP_002 LSRATRKASRRSEANLQSKSEDMTLNILPEFKQNGDTSL    
          340       350       360       370       




213 residues in 1 query   sequences
65951994 residues in 93482 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Jun 19 14:27:14 2019 done: Wed Jun 19 14:27:15 2019
 Total Scan time:  3.190 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]