Result of FASTA (omim) for
pFN21AE2725
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2725, 403 aa
1>>>pF1KE2725 403 - 403 aa - 403 aa
Library: /omim/omim.rfq.tfa
65089639 residues in 91964 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.7256+/-0.000358; mu= 11.8816+/- 0.023
mean_var=339.5531+/-69.613, 0's: 0 Z-trim(123.6): 74 B-trim: 88 in 1/57
Lambda= 0.069602
statistics sampled from 45334 (45425) to 45334 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.494), width: 16
Scan time: 4.810
The best scores are: opt bits E(91964)
NP_005351 (OMIM: 177075,601088,610202) transcripti ( 403) 2712 285.6 1.5e-76
NP_001026974 (OMIM: 177075,601088,610202) transcri ( 373) 2506 264.9 2.5e-70
XP_024306047 (OMIM: 177075,601088,610202) transcri ( 383) 2506 264.9 2.5e-70
XP_016878723 (OMIM: 177075,601088,610202) transcri ( 383) 2506 264.9 2.5e-70
XP_016878724 (OMIM: 177075,601088,610202) transcri ( 383) 2506 264.9 2.5e-70
XP_016878722 (OMIM: 177075,601088,610202) transcri ( 383) 2506 264.9 2.5e-70
NP_005452 (OMIM: 166300,608968,617041) transcripti ( 323) 706 84.1 5.9e-16
NP_963883 (OMIM: 147630,610303) transcription fact ( 353) 615 75.0 3.5e-13
XP_011535106 (OMIM: 162080,613750) neural retina-s ( 237) 432 56.3 9.6e-08
XP_005267766 (OMIM: 162080,613750) neural retina-s ( 237) 432 56.3 9.6e-08
NP_006168 (OMIM: 162080,613750) neural retina-spec ( 237) 432 56.3 9.6e-08
XP_011535104 (OMIM: 162080,613750) neural retina-s ( 237) 432 56.3 9.6e-08
NP_001341697 (OMIM: 162080,613750) neural retina-s ( 237) 432 56.3 9.6e-08
NP_001341698 (OMIM: 162080,613750) neural retina-s ( 237) 432 56.3 9.6e-08
XP_011535107 (OMIM: 162080,613750) neural retina-s ( 237) 432 56.3 9.6e-08
XP_011535103 (OMIM: 162080,613750) neural retina-s ( 339) 432 56.6 1.2e-07
NP_001341699 (OMIM: 162080,613750) neural retina-s ( 132) 411 53.8 3e-07
XP_011535108 (OMIM: 162080,613750) neural retina-s ( 234) 411 54.2 4.1e-07
NP_002350 (OMIM: 602020) transcription factor MafG ( 162) 348 47.6 2.7e-05
NP_116100 (OMIM: 602020) transcription factor MafG ( 162) 348 47.6 2.7e-05
XP_005249908 (OMIM: 600197) transcription factor M ( 156) 343 47.1 3.8e-05
NP_002351 (OMIM: 600197) transcription factor MafK ( 156) 343 47.1 3.8e-05
XP_006715836 (OMIM: 600197) transcription factor M ( 156) 343 47.1 3.8e-05
NP_036455 (OMIM: 604877) transcription factor MafF ( 164) 327 45.5 0.00012
NP_001155045 (OMIM: 604877) transcription factor M ( 164) 327 45.5 0.00012
NP_001155044 (OMIM: 604877) transcription factor M ( 164) 327 45.5 0.00012
NP_001155046 (OMIM: 604877) transcription factor M ( 135) 304 43.1 0.00053
>>NP_005351 (OMIM: 177075,601088,610202) transcription f (403 aa)
initn: 2712 init1: 2712 opt: 2712 Z-score: 1495.7 bits: 285.6 E(91964): 1.5e-76
Smith-Waterman score: 2712; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:1-403)
10 20 30 40 50 60
pF1KE2 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 STPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALISN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 STPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALISN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 YHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 YHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 GAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 YAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 YAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENG
310 320 330 340 350 360
370 380 390 400
pF1KE2 SSSDNPSSPEFFITEPTRKLEPSVGYATFWKPQHRVLTSVFTK
:::::::::::::::::::::::::::::::::::::::::::
NP_005 SSSDNPSSPEFFITEPTRKLEPSVGYATFWKPQHRVLTSVFTK
370 380 390 400
>>NP_001026974 (OMIM: 177075,601088,610202) transcriptio (373 aa)
initn: 2804 init1: 2506 opt: 2506 Z-score: 1384.2 bits: 264.9 E(91964): 2.5e-70
Smith-Waterman score: 2506; 99.7% identity (100.0% similar) in 373 aa overlap (1-373:1-373)
10 20 30 40 50 60
pF1KE2 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 STPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALISN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALISN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 YHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 GAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 YAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENG
310 320 330 340 350 360
370 380 390 400
pF1KE2 SSSDNPSSPEFFITEPTRKLEPSVGYATFWKPQHRVLTSVFTK
::::::::::::.
NP_001 SSSDNPSSPEFFM
370
>>XP_024306047 (OMIM: 177075,601088,610202) transcriptio (383 aa)
initn: 2804 init1: 2506 opt: 2506 Z-score: 1384.1 bits: 264.9 E(91964): 2.5e-70
Smith-Waterman score: 2506; 99.7% identity (100.0% similar) in 373 aa overlap (1-373:1-373)
10 20 30 40 50 60
pF1KE2 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_024 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 STPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALISN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_024 STPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALISN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_024 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 YHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_024 YHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 GAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_024 GAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 YAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_024 YAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENG
310 320 330 340 350 360
370 380 390 400
pF1KE2 SSSDNPSSPEFFITEPTRKLEPSVGYATFWKPQHRVLTSVFTK
::::::::::::.
XP_024 SSSDNPSSPEFFMYPRESSTSVM
370 380
>>XP_016878723 (OMIM: 177075,601088,610202) transcriptio (383 aa)
initn: 2804 init1: 2506 opt: 2506 Z-score: 1384.1 bits: 264.9 E(91964): 2.5e-70
Smith-Waterman score: 2506; 99.7% identity (100.0% similar) in 373 aa overlap (1-373:1-373)
10 20 30 40 50 60
pF1KE2 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 STPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALISN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 STPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALISN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 YHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 GAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 YAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENG
310 320 330 340 350 360
370 380 390 400
pF1KE2 SSSDNPSSPEFFITEPTRKLEPSVGYATFWKPQHRVLTSVFTK
::::::::::::.
XP_016 SSSDNPSSPEFFMYPRESSTSVM
370 380
>>XP_016878724 (OMIM: 177075,601088,610202) transcriptio (383 aa)
initn: 2804 init1: 2506 opt: 2506 Z-score: 1384.1 bits: 264.9 E(91964): 2.5e-70
Smith-Waterman score: 2506; 99.7% identity (100.0% similar) in 373 aa overlap (1-373:1-373)
10 20 30 40 50 60
pF1KE2 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 STPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALISN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 STPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALISN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 YHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 GAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 YAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENG
310 320 330 340 350 360
370 380 390 400
pF1KE2 SSSDNPSSPEFFITEPTRKLEPSVGYATFWKPQHRVLTSVFTK
::::::::::::.
XP_016 SSSDNPSSPEFFMYPRESSTSVM
370 380
>>XP_016878722 (OMIM: 177075,601088,610202) transcriptio (383 aa)
initn: 2804 init1: 2506 opt: 2506 Z-score: 1384.1 bits: 264.9 E(91964): 2.5e-70
Smith-Waterman score: 2506; 99.7% identity (100.0% similar) in 373 aa overlap (1-373:1-373)
10 20 30 40 50 60
pF1KE2 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 STPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALISN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 STPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALISN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 YHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 GAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKNRG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 YAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRENG
310 320 330 340 350 360
370 380 390 400
pF1KE2 SSSDNPSSPEFFITEPTRKLEPSVGYATFWKPQHRVLTSVFTK
::::::::::::.
XP_016 SSSDNPSSPEFFMYPRESSTSVM
370 380
>>NP_005452 (OMIM: 166300,608968,617041) transcription f (323 aa)
initn: 1071 init1: 641 opt: 706 Z-score: 408.0 bits: 84.1 E(91964): 5.9e-16
Smith-Waterman score: 1125; 53.3% identity (71.1% similar) in 377 aa overlap (1-373:1-323)
10 20 30 40 50
pF1KE2 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPV-ETDRIISQCGRLIAGGSLSSTP
::.::.:. .::::::::::::::::.::.:::::. ...: : :: .::.::::
NP_005 MAAELSMG-PELPTSPLAMEYVNDFDLLKFDVKKEPLGRAERPGRPCTRLQPAGSVSSTP
10 20 30 40 50
60 70 80 90 100 110
pF1KE2 MSTPCSSVPPSPSFSAPSPGSGSEQKAHLEDYYWMTGYPQQLNPEALGFSPEDAVEALIS
.:::::::: ::::: : .:::.:::: :::.. ::.:::::...:::::::::.
NP_005 LSTPCSSVPSSPSFS-P-----TEQKTHLEDLYWMASNYQQMNPEALNLTPEDAVEALIG
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE2 NSH---QLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSG
:: : .::.. :::.. . :.: .:..
NP_005 -SHPVPQPLQSFDSF-RGAHHHHHHHHPHPHHAYPGAG-----------------VAHDE
120 130 140 150
180 190 200 210 220 230
pF1KE2 AGPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGG
::: : ::: ::: .. :..:.: : . .. : : :.:.. ..::.:.
NP_005 LGPHAHPHHH-----HHHQASPPPSSAASPAQQLP-TSHPGPGPHATASATAAGGNGS--
160 170 180 190 200
240 250 260 270 280 290
pF1KE2 GGAAGAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTL
.:::::.:::.::::::::.::: .:.::::::::::::
NP_005 --------------------VEDRFSDDQLVSMSVRELNRHLRGFTKDEVIRLKQKRRTL
210 220 230 240
300 310 320 330 340 350
pF1KE2 KNRGYAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGF
::::::::::.:::::.: ::.::.::.:::..::::.:::.::::::: : :::..:::
NP_005 KNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKCEKLANSGF
250 260 270 280 290 300
360 370 380 390 400
pF1KE2 RENGSSSDNPSSPEFFITEPTRKLEPSVGYATFWKPQHRVLTSVFTK
:: ::.::.:::::::.
NP_005 REAGSTSDSPSSPEFFL
310 320
>>NP_963883 (OMIM: 147630,610303) transcription factor M (353 aa)
initn: 909 init1: 536 opt: 615 Z-score: 358.2 bits: 75.0 E(91964): 3.5e-13
Smith-Waterman score: 1049; 50.1% identity (63.9% similar) in 399 aa overlap (1-369:1-335)
10 20 30 40 50 60
pF1KE2 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
::.::::. ..::.::::.::::::::::::::::: :..:. : :: :::::::.
NP_963 MAAELAMG-AELPSSPLAIEYVNDFDLMKFEVKKEPPEAERF---CHRL-PPGSLSSTPL
10 20 30 40 50
70 80 90
pF1KE2 STPCSSVPPSPSFSAPSPGSG----------SEQ--------------------KAHLED
:::::::: :::: :::::.: : : : :::
NP_963 STPCSSVPSSPSFCAPSPGTGGGGGAGGGGGSSQAGGAPGPPSGGPGAVGGTSGKPALED
60 70 80 90 100 110
100 110 120 130 140 150
pF1KE2 YYWMTGYPQQLNPEALGFSPEDAVEALISNSHQLQGGFDGYARGAQQLAAAAGAGAGASL
:::.:: ..::::::...:::::::::...:. :. : . : : : : : .
NP_963 LYWMSGYQHHLNPEALNLTPEDAVEALIGSGHH--GAHHGAHHPAAAAAYEAFRGPGFAG
120 130 140 150 160 170
160 170 180 190 200 210
pF1KE2 GGSGEEMGPAAAVVSAVIAAAAAQSGAGPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASA
::....:: :. . :: :. :::::: ::::
NP_963 GGGADDMG------------AGHHHGA--HHAAHHHHAAHHHHH----------------
180 190 200
220 230 240 250 260 270
pF1KE2 GGAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGGALHPHHAAGGLHFDDRFSDEQLVTMS
::.: :::.: :: .....::::.:::.::
NP_963 ------------HHHHHGGAGHGGGAG-----------HH----VRLEERFSDDQLVSMS
210 220 230
280 290 300 310 320 330
pF1KE2 VRELNRQLRGVSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHVLESEKNQLLQQVDHL
:::::::::: :::::::::::::::::::::::::::::::::.::::: :: .::..:
NP_963 VRELNRQLRGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHILESEKCQLQSQVEQL
240 250 260 270 280 290
340 350 360 370 380 390
pF1KE2 KQEISRLVRERDAYKEKYEKLVSSGFRENGSSSDNPSSPEFFITEPTRKLEPSVGYATFW
: :..::..::: ::::::::.. : ..... : :
NP_963 KLEVGRLAKERDLYKEKYEKLAGRGGPGSAGGAGFPREPSPPQAGPGGAKGTADFFL
300 310 320 330 340 350
400
pF1KE2 KPQHRVLTSVFTK
>>XP_011535106 (OMIM: 162080,613750) neural retina-speci (237 aa)
initn: 730 init1: 413 opt: 432 Z-score: 260.6 bits: 56.3 E(91964): 9.6e-08
Smith-Waterman score: 544; 38.4% identity (52.9% similar) in 346 aa overlap (12-355:3-226)
10 20 30 40 50 60
pF1KE2 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
:: :::::::::::::::::::.:: : :: : ...
XP_011 MALPPSPLAMEYVNDFDLMKFEVKREPSE--------GR---PGPPTASLG
10 20 30 40
70 80 90 100 110
pF1KE2 STPCSSVPPSPSFSAPSPGSGSE-QKAHLEDYYWMTGYPQQLNP-EALGFSPEDAVEALI
::: :::::::.:: :. ...: . ::. ::.. :::. ::::.:::.:.: :
XP_011 STPYSSVPPSPTFSEPGMVGATEGTRPGLEELYWLATLQQQLGAGEALGLSPEEAMELL-
50 60 70 80 90
120 130 140 150 160 170
pF1KE2 SNSHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAG
:: .::. . :
XP_011 ------QG------------------------------QGPVPV--------------DG
100
180 190 200 210 220 230
pF1KE2 PHYHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGG
:: :.. ::. : .:
XP_011 PH---------GYY-------PGS------------------PEETG-------------
110 120
240 250 260 270 280 290
pF1KE2 AAGAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKN
: : ... .:::: ::.:::::::::::: ...:..::::.::::::
XP_011 ------AQH-------VQLAERFSDAALVSMSVRELNRQLRGCGRDEALRLKQRRRTLKN
130 140 150 160
300 310 320 330 340 350
pF1KE2 RGYAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRE
:::::.:: ::.:::. ::.:. .: :.: :. :..::.:::: :: . ..:.:::
XP_011 RGYAQACRSKRLQQRRGLEAERARLAAQLDALRAEVARLARERDLYKARCDRLTSSGPGS
170 180 190 200 210 220
360 370 380 390 400
pF1KE2 NGSSSDNPSSPEFFITEPTRKLEPSVGYATFWKPQHRVLTSVFTK
XP_011 GDPSHLFL
230
>>XP_005267766 (OMIM: 162080,613750) neural retina-speci (237 aa)
initn: 730 init1: 413 opt: 432 Z-score: 260.6 bits: 56.3 E(91964): 9.6e-08
Smith-Waterman score: 544; 38.4% identity (52.9% similar) in 346 aa overlap (12-355:3-226)
10 20 30 40 50 60
pF1KE2 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
:: :::::::::::::::::::.:: : :: : ...
XP_005 MALPPSPLAMEYVNDFDLMKFEVKREPSE--------GR---PGPPTASLG
10 20 30 40
70 80 90 100 110
pF1KE2 STPCSSVPPSPSFSAPSPGSGSE-QKAHLEDYYWMTGYPQQLNP-EALGFSPEDAVEALI
::: :::::::.:: :. ...: . ::. ::.. :::. ::::.:::.:.: :
XP_005 STPYSSVPPSPTFSEPGMVGATEGTRPGLEELYWLATLQQQLGAGEALGLSPEEAMELL-
50 60 70 80 90
120 130 140 150 160 170
pF1KE2 SNSHQLQGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAG
:: .::. . :
XP_005 ------QG------------------------------QGPVPV--------------DG
100
180 190 200 210 220 230
pF1KE2 PHYHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGG
:: :.. ::. : .:
XP_005 PH---------GYY-------PGS------------------PEETG-------------
110 120
240 250 260 270 280 290
pF1KE2 AAGAGGALHPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQKRRTLKN
: : ... .:::: ::.:::::::::::: ...:..::::.::::::
XP_005 ------AQH-------VQLAERFSDAALVSMSVRELNRQLRGCGRDEALRLKQRRRTLKN
130 140 150 160
300 310 320 330 340 350
pF1KE2 RGYAQSCRFKRVQQRHVLESEKNQLLQQVDHLKQEISRLVRERDAYKEKYEKLVSSGFRE
:::::.:: ::.:::. ::.:. .: :.: :. :..::.:::: :: . ..:.:::
XP_005 RGYAQACRSKRLQQRRGLEAERARLAAQLDALRAEVARLARERDLYKARCDRLTSSGPGS
170 180 190 200 210 220
360 370 380 390 400
pF1KE2 NGSSSDNPSSPEFFITEPTRKLEPSVGYATFWKPQHRVLTSVFTK
XP_005 GDPSHLFL
230
403 residues in 1 query sequences
65089639 residues in 91964 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Oct 2 18:30:41 2018 done: Tue Oct 2 18:30:42 2018
Total Scan time: 4.810 Total Display time: 0.100
Function used was FASTA [36.3.4 Apr, 2011]