FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2720, 308 aa
  1>>>pF1KE2720     308 - 308 aa - 308 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8944+/-0.000896; mu= 13.5891+/- 0.054
 mean_var=92.8456+/-17.853, 0's: 0 Z-trim(108.2): 23  B-trim: 0 in 0/51
 Lambda= 0.133105
 statistics sampled from 10047 (10050) to 10047 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.309), width:  16
 Scan time:  1.110

The best scores are:                                      opt bits E(32554)
CCDS9775.1 FUT8 gene_id:2530|Hs108|chr14           ( 575) 1917 378.3 7.7e-105
CCDS9776.2 FUT8 gene_id:2530|Hs108|chr14           ( 412)  822 167.9 1.2e-41


>>CCDS9775.1 FUT8 gene_id:2530|Hs108|chr14                (575 aa)
 initn: 1917 init1: 1917 opt: 1917  Z-score: 1995.7  bits: 378.3 E(32554): 7.7e-105
Smith-Waterman score: 1917; 99.6% identity (100.0% similar) in 279 aa overlap (1-279:1-279)

               10        20        30        40        50        60
pF1KE2 MRPWTGSWRWIMLILFAWGTLLFYIGGHLVRDNDHPDHSSRELSKILAKLERLKQQNEDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MRPWTGSWRWIMLILFAWGTLLFYIGGHLVRDNDHPDHSSRELSKILAKLERLKQQNEDL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 RRMAESLRIPEGPIDQGPAIGRVRVLEEQLVKAKEQIENYKKQTRNGLGKDHEILRRRIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 RRMAESLRIPEGPIDQGPAIGRVRVLEEQLVKAKEQIENYKKQTRNGLGKDHEILRRRIE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 NGAKELWFFLQSELKKLKNLEGNELQRHADEFLLDLGHYERSIMTDLYYLSQTDGAGDWR
       ::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
CCDS97 NGAKELWFFLQSELKKLKNLEGNELQRHADEFLLDLGHHERSIMTDLYYLSQTDGAGDWR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 EKEAKDLTELVQRRITYLQNPKDCSKAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 EKEAKDLTELVQRRITYLQNPKDCSKAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 LILESQNWRYATGGWETVFRPVSETCTDRSGISTGHWSGTPIMNLLVITLFPGQLDCTID
       :::::::::::::::::::::::::::::::::::::::                     
CCDS97 LILESQNWRYATGGWETVFRPVSETCTDRSGISTGHWSGEVKDKNVQVVELPIVDSLHPR
              250       260       270       280       290       300

                                                                   
pF1KE2 TQKIHFVE                                                    
                                                                   
CCDS97 PPYLPLAVPEDLADRLVRVHGDPAVWWVSQFVKYLIRPQPWLEKEIEEATKKLGFKHPVI
              310       320       330       340       350       360

>>CCDS9776.2 FUT8 gene_id:2530|Hs108|chr14                (412 aa)
 initn: 822 init1: 822 opt: 822  Z-score: 861.3  bits: 167.9 E(32554): 1.2e-41
Smith-Waterman score: 822; 100.0% identity (100.0% similar) in 116 aa overlap (164-279:1-116)

           140       150       160       170       180       190   
pF1KE2 LKKLKNLEGNELQRHADEFLLDLGHYERSIMTDLYYLSQTDGAGDWREKEAKDLTELVQR
                                     ::::::::::::::::::::::::::::::
CCDS97                               MTDLYYLSQTDGAGDWREKEAKDLTELVQR
                                             10        20        30

           200       210       220       230       240       250   
pF1KE2 RITYLQNPKDCSKAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQNWRYATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 RITYLQNPKDCSKAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQNWRYATG
               40        50        60        70        80        90

           260       270       280       290       300             
pF1KE2 GWETVFRPVSETCTDRSGISTGHWSGTPIMNLLVITLFPGQLDCTIDTQKIHFVE     
       ::::::::::::::::::::::::::                                  
CCDS97 GWETVFRPVSETCTDRSGISTGHWSGEVKDKNVQVVELPIVDSLHPRPPYLPLAVPEDLA
              100       110       120       130       140       150




308 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Jun  6 17:55:32 2018 done: Wed Jun  6 17:55:32 2018
 Total Scan time:  1.110 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]