FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2716, 235 aa
  1>>>pF1KE2716     235 - 235 aa - 235 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3881+/-0.000635; mu= 9.3788+/- 0.039
 mean_var=84.7194+/-16.488, 0's: 0 Z-trim(113.1): 5  B-trim: 0 in 0/51
 Lambda= 0.139342
 statistics sampled from 13757 (13761) to 13757 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.766), E-opt: 0.2 (0.423), width:  16
 Scan time:  1.170

The best scores are:                                      opt bits E(32554)
CCDS5239.1 MYCT1 gene_id:80177|Hs108|chr6          ( 235) 1566 323.7 6.3e-89


>>CCDS5239.1 MYCT1 gene_id:80177|Hs108|chr6               (235 aa)
 initn: 1566 init1: 1566 opt: 1566  Z-score: 1710.0  bits: 323.7 E(32554): 6.3e-89
Smith-Waterman score: 1566; 100.0% identity (100.0% similar) in 235 aa overlap (1-235:1-235)

               10        20        30        40        50        60
pF1KE2 MRTQVYEGLCKNYFSLAVLQRDRIKLLFFDILVFLSVFLLFLLFLVDIMANNTTSLGSPW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MRTQVYEGLCKNYFSLAVLQRDRIKLLFFDILVFLSVFLLFLLFLVDIMANNTTSLGSPW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 PENFWEDLIMSFTVSMAIGLVLGGFIWAVFICLSRRRRASAPISQWSSSRRSRSSYTHGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 PENFWEDLIMSFTVSMAIGLVLGGFIWAVFICLSRRRRASAPISQWSSSRRSRSSYTHGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 NRTGFYRHSGCERRSNLSLASLTFQRQASLEQANSFPRKSSFRASTFHPFLQCPPLPVET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 NRTGFYRHSGCERRSNLSLASLTFQRQASLEQANSFPRKSSFRASTFHPFLQCPPLPVET
              130       140       150       160       170       180

              190       200       210       220       230     
pF1KE2 ESQLVTLPSSNISPTISTSHSLSRPDYWSSNSLRVGLSTPPPPAYESIIKAFPDS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 ESQLVTLPSSNISPTISTSHSLSRPDYWSSNSLRVGLSTPPPPAYESIIKAFPDS
              190       200       210       220       230     




235 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Jan 30 11:05:51 2018 done: Tue Jan 30 11:05:52 2018
 Total Scan time:  1.170 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]