Result of FASTA (ccds) for
pFN21AE2707
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2707, 237 aa
1>>>pF1KE2707 237 - 237 aa - 237 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1556+/-0.00075; mu= 10.9910+/- 0.045
mean_var=88.7032+/-17.564, 0's: 0 Z-trim(110.4): 15 B-trim: 2 in 1/50
Lambda= 0.136177
statistics sampled from 11596 (11606) to 11596 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.357), width: 16
Scan time: 1.090
The best scores are: opt bits E(32554)
CCDS11848.2 VAPA gene_id:9218|Hs108|chr18 ( 249) 1590 321.7 2.7e-88
CCDS33498.1 VAPB gene_id:9217|Hs108|chr20 ( 243) 1001 206.0 1.8e-53
CCDS11847.2 VAPA gene_id:9218|Hs108|chr18 ( 294) 918 189.7 1.7e-48
CCDS56198.1 VAPB gene_id:9217|Hs108|chr20 ( 99) 376 83.0 7.9e-17
>>CCDS11848.2 VAPA gene_id:9218|Hs108|chr18 (249 aa)
initn: 1590 init1: 1590 opt: 1590 Z-score: 1698.5 bits: 321.7 E(32554): 2.7e-88
Smith-Waterman score: 1590; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:8-244)
10 20 30 40 50
pF1KE2 MAKHEQILVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYC
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MASASGAMAKHEQILVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE2 VRPNSGIIDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VRPNSGIIDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE2 LMDSKLRCVFEMPNENDKLNDMEPSKAVPLNASKQDGPMPKPHSVSLNDTETRKLMEECK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LMDSKLRCVFEMPNENDKLNDMEPSKAVPLNASKQDGPMPKPHSVSLNDTETRKLMEECK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE2 RLQGEMMKLSEENRHLRDEGLRLRKVAHSDKPGSTSTASFRDNVTSPLPSLLVVIAAIFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RLQGEMMKLSEENRHLRDEGLRLRKVAHSDKPGSTSTASFRDNVTSPLPSLLVVIAAIFI
190 200 210 220 230 240
pF1KE2 GFFL
::::
CCDS11 GFFLGKFIL
>>CCDS33498.1 VAPB gene_id:9217|Hs108|chr20 (243 aa)
initn: 985 init1: 800 opt: 1001 Z-score: 1073.3 bits: 206.0 E(32554): 1.8e-53
Smith-Waterman score: 1001; 63.2% identity (87.0% similar) in 239 aa overlap (1-234:1-239)
10 20 30 40 50 60
pF1KE2 MAKHEQILVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGI
::: ::.: :.: .:::.::::::::::::: ::.::.:::::::::::::::::::::
CCDS33 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 IDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLR
:: :....:::::::::::::::::::::::..::: .:::::::::::::..:::::::
CCDS33 IDAGASINVSVMLQPFDYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLR
70 80 90 100 110 120
130 140 150 160 170
pF1KE2 CVFEMPNENDKLNDMEPSKAVPLNASKQDGPM-PKPHSVSLNDTETRKLMEECKRLQGEM
::::.: :::: .:.: .: . .::: . :. : : ::.:::..:.::::::::::.
CCDS33 CVFELPAENDKPHDVEINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEECKRLQGEV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE2 MKLSEENRHLRDE-GLRLRKVAHSDKPGSTSTASFRDN-VTSPLPSLLVV--IAAIFIGF
..: :::.....: :::.::...:..: :. . . ... ... : .:.:. :....::
CCDS33 QRLREENKQFKEEDGLRMRKTVQSNSPISALAPTGKEEGLSTRLLALVVLFFIVGVIIGK
190 200 210 220 230 240
pF1KE2 FL
CCDS33 IAL
>>CCDS11847.2 VAPA gene_id:9218|Hs108|chr18 (294 aa)
initn: 912 init1: 912 opt: 918 Z-score: 983.9 bits: 189.7 E(32554): 1.7e-48
Smith-Waterman score: 1413; 83.3% identity (83.3% similar) in 269 aa overlap (1-224:8-276)
10 20 30 40 50
pF1KE2 MAKHEQILVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYC
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MASASGAMAKHEQILVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE2 VRPNSGIIDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VRPNSGIIDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDE
70 80 90 100 110 120
120 130
pF1KE2 LMDSKLRCVFEMPNENDKL-----------------------------------------
:::::::::::::::::::
CCDS11 LMDSKLRCVFEMPNENDKLGITPPGNAPTVTSMSSINNTVATPASYHTKDDPRGLSVLKQ
130 140 150 160 170 180
140 150 160 170 180
pF1KE2 ----NDMEPSKAVPLNASKQDGPMPKPHSVSLNDTETRKLMEECKRLQGEMMKLSEENRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EKQKNDMEPSKAVPLNASKQDGPMPKPHSVSLNDTETRKLMEECKRLQGEMMKLSEENRH
190 200 210 220 230 240
190 200 210 220 230
pF1KE2 LRDEGLRLRKVAHSDKPGSTSTASFRDNVTSPLPSLLVVIAAIFIGFFL
::::::::::::::::::::::::::::::::::::
CCDS11 LRDEGLRLRKVAHSDKPGSTSTASFRDNVTSPLPSLLVVIAAIFIGFFLGKFIL
250 260 270 280 290
>>CCDS56198.1 VAPB gene_id:9217|Hs108|chr20 (99 aa)
initn: 392 init1: 372 opt: 376 Z-score: 415.6 bits: 83.0 E(32554): 7.9e-17
Smith-Waterman score: 376; 62.2% identity (81.1% similar) in 90 aa overlap (1-90:1-90)
10 20 30 40 50 60
pF1KE2 MAKHEQILVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGI
::: ::.: :.: .:::.::::::::::::: ::.::.:::::::::::::::::::::
CCDS56 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 IDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLR
:: :....:: : . . ... .: .
CCDS56 IDAGASINVSGRRWTADEEDSAEQQPHFSISPNWEGRRP
70 80 90
237 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Dec 15 09:59:30 2017 done: Fri Dec 15 09:59:30 2017
Total Scan time: 1.090 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]