Result of FASTA (ccds) for
pFN21AE2688
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2688, 1394 aa
1>>>pF1KE2688 1394 - 1394 aa - 1394 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5487+/-0.00123; mu= 22.4581+/- 0.074
mean_var=74.1266+/-14.756, 0's: 0 Z-trim(101.2): 33 B-trim: 0 in 0/49
Lambda= 0.148966
statistics sampled from 6427 (6439) to 6427 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.541), E-opt: 0.2 (0.198), width: 16
Scan time: 3.690
The best scores are: opt bits E(32554)
CCDS33189.1 LRPPRC gene_id:10128|Hs108|chr2 (1394) 8978 1940.1 0
>>CCDS33189.1 LRPPRC gene_id:10128|Hs108|chr2 (1394 aa)
initn: 8978 init1: 8978 opt: 8978 Z-score: 10417.7 bits: 1940.1 E(32554): 0
Smith-Waterman score: 8978; 100.0% identity (100.0% similar) in 1394 aa overlap (1-1394:1-1394)
10 20 30 40 50 60
pF1KE2 MAALLRSARWLLRAGAAPRLPLSLRLLPGGPGRLHAASYLPAARAGPVAGGLLSPARLYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAALLRSARWLLRAGAAPRLPLSLRLLPGGPGRLHAASYLPAARAGPVAGGLLSPARLYA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 IAAKEKDIQEESTFSSRKISNQFDWALMRLDLSVRRTGRIPKKLLQKVFNDTCRSGGLGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IAAKEKDIQEESTFSSRKISNQFDWALMRLDLSVRRTGRIPKKLLQKVFNDTCRSGGLGG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SHALLLLRSCGSLLPELKLEERTEFAHRIWDTLQKLGAVYDVSHYNALLKVYLQNEYKFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SHALLLLRSCGSLLPELKLEERTEFAHRIWDTLQKLGAVYDVSHYNALLKVYLQNEYKFS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 PTDFLAKMEEANIQPNRVTYQRLIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PTDFLAKMEEANIQPNRVTYQRLIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 GHARAGDMENAENILTVMRDAGIEPGPDTYLALLNAYAEKGDIDHVKQTLEKVEKSELHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GHARAGDMENAENILTVMRDAGIEPGPDTYLALLNAYAEKGDIDHVKQTLEKVEKSELHL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 MDRDLLQIIFSFSKAGYPQYVSEILEKVTCERRYIPDAMNLILLLVTEKLEDVALQILLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MDRDLLQIIFSFSKAGYPQYVSEILEKVTCERRYIPDAMNLILLLVTEKLEDVALQILLA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 CPVSKEDGPSVFGSFFLQHCVTMNTPVEKLTDYCKKLKEVQMHSFPLQFTLHCALLANKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CPVSKEDGPSVFGSFFLQHCVTMNTPVEKLTDYCKKLKEVQMHSFPLQFTLHCALLANKT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 DLAKALMKAVKEEGFPIRPHYFWPLLVGRRKEKNVQGIIEILKGMQELGVHPDQETYTDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DLAKALMKAVKEEGFPIRPHYFWPLLVGRRKEKNVQGIIEILKGMQELGVHPDQETYTDY
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 VIPCFDSVNSARAILQENGCLSDSDMFSQAGLRSEAANGNLDFVLSFLKSNTLPISLQSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VIPCFDSVNSARAILQENGCLSDSDMFSQAGLRSEAANGNLDFVLSFLKSNTLPISLQSI
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 RSSLLLGFRRSMNINLWSEITELLYKDGRYCQEPRGPTEAVGYFLYNLIDSMSDSEVQAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RSSLLLGFRRSMNINLWSEITELLYKDGRYCQEPRGPTEAVGYFLYNLIDSMSDSEVQAK
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE2 EEHLRQYFHQLEKMNVKIPENIYRGIRNLLESYHVPELIKDAHLLVESKNLDFQKTVQLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EEHLRQYFHQLEKMNVKIPENIYRGIRNLLESYHVPELIKDAHLLVESKNLDFQKTVQLT
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE2 SSELESTLETLKAENQPIRDVLKQLILVLCSEENMQKALELKAKYESDMVTGGYAALINL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SSELESTLETLKAENQPIRDVLKQLILVLCSEENMQKALELKAKYESDMVTGGYAALINL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE2 CCRHDKVEDALNLKEEFDRLDSSAVLDTGKYVGLVRVLAKHGKLQDAINILKEMKEKDVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CCRHDKVEDALNLKEEFDRLDSSAVLDTGKYVGLVRVLAKHGKLQDAINILKEMKEKDVL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE2 IKDTTALSFFHMLNGAALRGEIETVKQLHEAIVTLGLAEPSTNISFPLVTVHLEKGDLST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IKDTTALSFFHMLNGAALRGEIETVKQLHEAIVTLGLAEPSTNISFPLVTVHLEKGDLST
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE2 ALEVAIDCYEKYKVLPRIHDVLCKLVEKGETDLIQKAMDFVSQEQGEMVMLYDLFFAFLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ALEVAIDCYEKYKVLPRIHDVLCKLVEKGETDLIQKAMDFVSQEQGEMVMLYDLFFAFLQ
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE2 TGNYKEAKKIIETPGIRARSARLQWFCDRCVANNQVETLEKLVELTQKLFECDRDQMYYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TGNYKEAKKIIETPGIRARSARLQWFCDRCVANNQVETLEKLVELTQKLFECDRDQMYYN
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KE2 LLKLYKINGDWQRADAVWNKIQEENVIPREKTLRLLAEILREGNQEVPFDVPELWYEDEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LLKLYKINGDWQRADAVWNKIQEENVIPREKTLRLLAEILREGNQEVPFDVPELWYEDEK
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KE2 HSLNSSSASTTEPDFQKDILIACRLNQKKGAYDIFLNAKEQNIVFNAETYSNLIKLLMSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 HSLNSSSASTTEPDFQKDILIACRLNQKKGAYDIFLNAKEQNIVFNAETYSNLIKLLMSE
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KE2 DYFTQAMEVKAFAETHIKGFTLNDAANSRLIITQVRRDYLKEAVTTLKTVLDQQQTPSRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DYFTQAMEVKAFAETHIKGFTLNDAANSRLIITQVRRDYLKEAVTTLKTVLDQQQTPSRL
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KE2 AVTRVIQALAMKGDVENIEVVQKMLNGLEDSIGLSKMVFINNIALAQIKNNNIDAAIENI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AVTRVIQALAMKGDVENIEVVQKMLNGLEDSIGLSKMVFINNIALAQIKNNNIDAAIENI
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KE2 ENMLTSENKVIEPQYFGLAYLFRKVIEEQLEPAVEKISIMAERLANQFAIYKPVTDFFLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ENMLTSENKVIEPQYFGLAYLFRKVIEEQLEPAVEKISIMAERLANQFAIYKPVTDFFLQ
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KE2 LVDAGKVDDARALLQRCGAIAEQTPILLLFLLRNSRKQGKASTVKSVLELIPELNEKEEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LVDAGKVDDARALLQRCGAIAEQTPILLLFLLRNSRKQGKASTVKSVLELIPELNEKEEA
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KE2 YNSLMKSYVSEKDVTSAKALYEHLTAKNTKLDDLFLKRYASLLKYAGEPVPFIEPPESFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 YNSLMKSYVSEKDVTSAKALYEHLTAKNTKLDDLFLKRYASLLKYAGEPVPFIEPPESFE
1330 1340 1350 1360 1370 1380
1390
pF1KE2 FYAQQLRKLRENSS
::::::::::::::
CCDS33 FYAQQLRKLRENSS
1390
1394 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu May 11 11:23:00 2017 done: Thu May 11 11:23:01 2017
Total Scan time: 3.690 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]