FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2679, 90 aa
  1>>>pF1KE2679     90 - 90 aa - 90 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6848+/-0.000511; mu= 10.9474+/- 0.031
 mean_var=45.1955+/- 8.924, 0's: 0 Z-trim(112.1): 11  B-trim: 0 in 0/52
 Lambda= 0.190777
 statistics sampled from 12905 (12915) to 12905 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.397), width:  16
 Scan time:  1.440

The best scores are:                                      opt bits E(32554)
CCDS8017.1 SCGB1D2 gene_id:10647|Hs108|chr11       (  90)  581 166.2 2.4e-42
CCDS8015.1 SCGB1D1 gene_id:10648|Hs108|chr11       (  90)  348 102.1 4.8e-23
CCDS31583.1 SCGB1D4 gene_id:404552|Hs108|chr11     (  83)  316 93.3   2e-20


>>CCDS8017.1 SCGB1D2 gene_id:10647|Hs108|chr11            (90 aa)
 initn: 581 init1: 581 opt: 581  Z-score: 873.8  bits: 166.2 E(32554): 2.4e-42
Smith-Waterman score: 581; 100.0% identity (100.0% similar) in 90 aa overlap (1-90:1-90)

               10        20        30        40        50        60
pF1KE2 MKLSVCLLLVTLALCCYQANAEFCPALVSELLDFFFISEPLFKLSLAKFDAPPEAVAAKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 MKLSVCLLLVTLALCCYQANAEFCPALVSELLDFFFISEPLFKLSLAKFDAPPEAVAAKL
               10        20        30        40        50        60

               70        80        90
pF1KE2 GVKRCTDQMSLQKRSLIAEVLVKILKKCSV
       ::::::::::::::::::::::::::::::
CCDS80 GVKRCTDQMSLQKRSLIAEVLVKILKKCSV
               70        80        90

>>CCDS8015.1 SCGB1D1 gene_id:10648|Hs108|chr11            (90 aa)
 initn: 348 init1: 348 opt: 348  Z-score: 527.2  bits: 102.1 E(32554): 4.8e-23
Smith-Waterman score: 348; 60.2% identity (83.0% similar) in 88 aa overlap (1-88:1-88)

               10        20        30        40        50        60
pF1KE2 MKLSVCLLLVTLALCCYQANAEFCPALVSELLDFFFISEPLFKLSLAKFDAPPEAVAAKL
       :.:::::::.:::::::.:::  : :: ::.  :.. ..:.::..:::: :: ::::::.
CCDS80 MRLSVCLLLLTLALCCYRANAVVCQALGSEITGFLLAGKPVFKFQLAKFKAPLEAVAAKM
               10        20        30        40        50        60

               70        80        90
pF1KE2 GVKRCTDQMSLQKRSLIAEVLVKILKKCSV
        ::.:.: :. .:: ::...: :: .::  
CCDS80 EVKKCVDTMAYEKRVLITKTLGKIAEKCDR
               70        80        90

>>CCDS31583.1 SCGB1D4 gene_id:404552|Hs108|chr11          (83 aa)
 initn: 316 init1: 316 opt: 316  Z-score: 480.2  bits: 93.3 E(32554): 2e-20
Smith-Waterman score: 316; 60.8% identity (87.8% similar) in 74 aa overlap (1-74:1-74)

               10        20        30        40        50        60
pF1KE2 MKLSVCLLLVTLALCCYQANAEFCPALVSELLDFFFISEPLFKLSLAKFDAPPEAVAAKL
       :.::::::.:.::::::::.:  :::..::.  :.:.:.   .:..::.. ::::.::::
CCDS31 MRLSVCLLMVSLALCCYQAHALVCPAVASEITVFLFLSDAAVNLQVAKLNPPPEALAAKL
               10        20        30        40        50        60

               70        80        90
pF1KE2 GVKRCTDQMSLQKRSLIAEVLVKILKKCSV
        ::.::::.:..::                
CCDS31 EVKHCTDQISFKKRLSLKKSWWK       
               70        80          




90 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Feb 17 10:49:27 2017 done: Fri Feb 17 10:49:27 2017
 Total Scan time:  1.440 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]