FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2670, 711 aa
  1>>>pF1KE2670     711 - 711 aa - 711 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.5506+/-0.000869; mu= 6.2968+/- 0.052
 mean_var=184.5110+/-36.874, 0's: 0 Z-trim(113.0): 19  B-trim: 7 in 1/52
 Lambda= 0.094420
 statistics sampled from 13675 (13687) to 13675 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.751), E-opt: 0.2 (0.42), width:  16
 Scan time:  4.090

The best scores are:                                      opt bits E(32554)
CCDS44387.1 C10orf71 gene_id:118461|Hs108|chr10    (1435) 4701 653.1 8.4e-187


>>CCDS44387.1 C10orf71 gene_id:118461|Hs108|chr10         (1435 aa)
 initn: 4701 init1: 4701 opt: 4701  Z-score: 3467.2  bits: 653.1 E(32554): 8.4e-187
Smith-Waterman score: 4701; 99.6% identity (99.6% similar) in 692 aa overlap (1-692:1-692)

               10        20        30        40        50        60
pF1KE2 MMQGNKKCTDAFSDSSSIGSVLDDADREVSSLTDRAFRSLCISEDTSFHDSYLAVSPDIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MMQGNKKCTDAFSDSSSIGSVLDDADREVSSLTDRAFRSLCISEDTSFHDSYLAVSPDIT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 RQVFGTFHQRTVGHTQRKSGIWSQLPSQGTEHSGWAATFQQLPKYVQGEEKYPKTSPPPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RQVFGTFHQRTVGHTQRKSGIWSQLPSQGTEHSGWAATFQQLPKYVQGEEKYPKTSPPPT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 PVQRRLEVPVSGLRSSNKPVSKVSTLIKSFDRTESQRCESRPTASKPPALKNPPKFAPLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PVQRRLEVPVSGLRSSNKPVSKVSTLIKSFDRTESQRCESRPTASKPPALKNPPKFAPLP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 ENSVNFCFDSAFLTVRRVPAEVSNTHQNSYQPGRKHGEQESSKNPEMACHGSSSFLPAAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ENSVNFCFDSAFLTVRRVPAEVSNTHQNSYQPGRKHGEQESSKNPEMACHGSSSFLPAAN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 DTATLCESKFPSPHHKPVTGEPGRGKGTFLHSENSAFESWNAHQPKLLERKDTAGTVPES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DTATLCESKFPSPHHKPVTGEPGRGKGTFLHSENSAFESWNAHQPKLLERKDTAGTVPES
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 KAPKHYGDTTLLREPCPPELTVSPCQVQASCSQEENRLEAGALSTSIPWGCRDPGAQVFA
       ::::::::::::::::::: :::::::::::::::::: :::::::::::::::::::::
CCDS44 KAPKHYGDTTLLREPCPPERTVSPCQVQASCSQEENRLAAGALSTSIPWGCRDPGAQVFA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 VEGKAPSSQPDSQEKPAQPPWRKPKTGKKGKESLQDTLEEKTQTNQRGPPLYTKHNPQEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VEGKAPSSQPDSQEKPAQPPWRKPKTGKKGKESLQDTLEEKTQTNQRGPPLYTKHNPQEQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 FSENNALDLPVEPNEHYDPPFNISKLLTPIIPSKHALDSAASQPAERTPSPPGQLNGYQE
       :::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::
CCDS44 FSENNALDLPVEPNEHYDPPFNISKLLTPIIPSKHALDSADSQPAERTPSPPGQLNGYQE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 KEPSECQSRDSYKSKAPSLLFNLKDVRKRVKSTYSSSPLLKVLDEKTRGKVDGKQEPVSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KEPSECQSRDSYKSKAPSLLFNLKDVRKRVKSTYSSSPLLKVLDEKTRGKVDGKQEPVSN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE2 GVILPNGLEESPPNELSKERPADDPTASHINPQKDPTADPSEPSADSYLTLSTAPTIAKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GVILPNGLEESPPNELSKERPADDPTASHINPQKDPTADPSEPSADSYLTLSTAPTIAKA
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE2 PFYVNGEAAERSSYENKEVEGELEMGPAGSSWCPDSREHRPRKHLSLRLCNRDPEPGGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PFYVNGEAAERSSYENKEVEGELEMGPAGSSWCPDSREHRPRKHLSLRLCNRDPEPGGAT
              610       620       630       640       650       660

              670       680       690       700       710          
pF1KE2 EKMKTHQLENGLSRSVSQETEPEREAGLQNTHTHDHQHILSLFRSIKSRRQ         
       ::::::::::::::::::::::::::::::::                            
CCDS44 EKMKTHQLENGLSRSVSQETEPEREAGLQNTHLNQKFFPGPLSPEEEDVFYSDSQSDFMP
              670       680       690       700       710       720

CCDS44 SLKGKAKFSTSSSDQSFASFDDQQKMWFTENQREDRRKDVSAGDSQKDEKENVMRKDELQ
              730       740       750       760       770       780




711 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Feb  2 14:42:19 2017 done: Thu Feb  2 14:42:20 2017
 Total Scan time:  4.090 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]