Result of FASTA (omim) for
pFN21AE2647
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2647, 492 aa
1>>>pF1KE2647 492 - 492 aa - 492 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.3428+/-0.000405; mu= 8.7995+/- 0.026
mean_var=311.3290+/-65.812, 0's: 0 Z-trim(121.7): 75 B-trim: 983 in 1/58
Lambda= 0.072688
statistics sampled from 38638 (38726) to 38638 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.454), width: 16
Scan time: 11.580
The best scores are: opt bits E(85289)
NP_002507 (OMIM: 601991) RNA-binding protein Nova- ( 492) 3120 340.7 5.7e-93
XP_016882328 (OMIM: 601991) PREDICTED: RNA-binding ( 383) 2416 266.7 8.2e-71
XP_016882329 (OMIM: 601991) PREDICTED: RNA-binding ( 383) 2416 266.7 8.2e-71
XP_016882327 (OMIM: 601991) PREDICTED: RNA-binding ( 383) 2416 266.7 8.2e-71
XP_006723293 (OMIM: 601991) PREDICTED: RNA-binding ( 383) 2416 266.7 8.2e-71
NP_006480 (OMIM: 602157) RNA-binding protein Nova- ( 483) 1735 195.4 3e-49
XP_016876832 (OMIM: 602157) PREDICTED: RNA-binding ( 446) 1609 182.2 2.7e-45
NP_002506 (OMIM: 602157) RNA-binding protein Nova- ( 507) 1281 147.9 6.6e-35
XP_016876838 (OMIM: 602157) PREDICTED: RNA-binding ( 361) 1147 133.6 9.1e-31
XP_011535102 (OMIM: 602157) PREDICTED: RNA-binding ( 361) 1147 133.6 9.1e-31
XP_016876836 (OMIM: 602157) PREDICTED: RNA-binding ( 385) 1063 124.8 4.2e-28
XP_016876835 (OMIM: 602157) PREDICTED: RNA-binding ( 385) 1063 124.8 4.2e-28
XP_016876833 (OMIM: 602157) PREDICTED: RNA-binding ( 385) 1063 124.8 4.2e-28
XP_016876837 (OMIM: 602157) PREDICTED: RNA-binding ( 385) 1063 124.8 4.2e-28
XP_016876834 (OMIM: 602157) PREDICTED: RNA-binding ( 385) 1063 124.8 4.2e-28
XP_016876831 (OMIM: 602157) PREDICTED: RNA-binding ( 470) 1063 125.0 4.8e-28
NP_006482 (OMIM: 602157) RNA-binding protein Nova- ( 181) 717 88.1 2.2e-17
XP_016858233 (OMIM: 603444) PREDICTED: far upstrea ( 643) 293 44.4 0.0012
NP_003893 (OMIM: 603444) far upstream element-bind ( 644) 293 44.4 0.0012
XP_016858232 (OMIM: 603444) PREDICTED: far upstrea ( 653) 293 44.4 0.0012
XP_016858231 (OMIM: 603444) PREDICTED: far upstrea ( 664) 293 44.4 0.0012
NP_001290362 (OMIM: 603444) far upstream element-b ( 665) 293 44.4 0.0012
XP_016858230 (OMIM: 603444) PREDICTED: far upstrea ( 666) 293 44.4 0.0012
XP_011540695 (OMIM: 603444) PREDICTED: far upstrea ( 667) 293 44.4 0.0012
XP_016858229 (OMIM: 603444) PREDICTED: far upstrea ( 675) 293 44.4 0.0012
XP_011540694 (OMIM: 603444) PREDICTED: far upstrea ( 687) 293 44.4 0.0012
XP_016858228 (OMIM: 603444) PREDICTED: far upstrea ( 688) 293 44.4 0.0012
XP_011540693 (OMIM: 603444) PREDICTED: far upstrea ( 688) 293 44.4 0.0012
>>NP_002507 (OMIM: 601991) RNA-binding protein Nova-2 [H (492 aa)
initn: 3120 init1: 3120 opt: 3120 Z-score: 1790.1 bits: 340.7 E(85289): 5.7e-93
Smith-Waterman score: 3120; 100.0% identity (100.0% similar) in 492 aa overlap (1-492:1-492)
10 20 30 40 50 60
pF1KE2 MEPEAPDSRKRPLETPPEVVCTKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MEPEAPDSRKRPLETPPEVVCTKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 ETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 PQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 TVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 AAAASAAAASGLLGPAGLAGVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLGLGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AAAASAAAASGLLGPAGLAGVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLGLGL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 NSAAASGVLAAVAAGANPAAAAAANLLASYAGEAGAGPAGGAAPPPPPPPGALGSFALAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 NSAAASGVLAAVAAGANPAAAAAANLLASYAGEAGAGPAGGAAPPPPPPPGALGSFALAA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 AANGYLGAGAGGGAGGGGGPLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AANGYLGAGAGGGAGGGGGPLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 ILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYE
430 440 450 460 470 480
490
pF1KE2 QGVRASNPQKVG
::::::::::::
NP_002 QGVRASNPQKVG
490
>>XP_016882328 (OMIM: 601991) PREDICTED: RNA-binding pro (383 aa)
initn: 2416 init1: 2416 opt: 2416 Z-score: 1392.3 bits: 266.7 E(85289): 8.2e-71
Smith-Waterman score: 2416; 100.0% identity (100.0% similar) in 383 aa overlap (110-492:1-383)
80 90 100 110 120 130
pF1KE2 ERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPN
::::::::::::::::::::::::::::::
XP_016 MTKPEVVNILQPQTTMNPDRAKQAKLIVPN
10 20 30
140 150 160 170 180 190
pF1KE2 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQK
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE2 VQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGPAGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGPAGLA
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE2 GVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLGLGLNSAAASGVLAAVAAGANPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLGLGLNSAAASGVLAAVAAGANPA
160 170 180 190 200 210
320 330 340 350 360 370
pF1KE2 AAAAANLLASYAGEAGAGPAGGAAPPPPPPPGALGSFALAAAANGYLGAGAGGGAGGGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AAAAANLLASYAGEAGAGPAGGAAPPPPPPPGALGSFALAAAANGYLGAGAGGGAGGGGG
220 230 240 250 260 270
380 390 400 410 420 430
pF1KE2 PLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGAR
280 290 300 310 320 330
440 450 460 470 480 490
pF1KE2 IQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVRASNPQKVG
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVRASNPQKVG
340 350 360 370 380
>>XP_016882329 (OMIM: 601991) PREDICTED: RNA-binding pro (383 aa)
initn: 2416 init1: 2416 opt: 2416 Z-score: 1392.3 bits: 266.7 E(85289): 8.2e-71
Smith-Waterman score: 2416; 100.0% identity (100.0% similar) in 383 aa overlap (110-492:1-383)
80 90 100 110 120 130
pF1KE2 ERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPN
::::::::::::::::::::::::::::::
XP_016 MTKPEVVNILQPQTTMNPDRAKQAKLIVPN
10 20 30
140 150 160 170 180 190
pF1KE2 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQK
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE2 VQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGPAGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGPAGLA
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE2 GVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLGLGLNSAAASGVLAAVAAGANPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLGLGLNSAAASGVLAAVAAGANPA
160 170 180 190 200 210
320 330 340 350 360 370
pF1KE2 AAAAANLLASYAGEAGAGPAGGAAPPPPPPPGALGSFALAAAANGYLGAGAGGGAGGGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AAAAANLLASYAGEAGAGPAGGAAPPPPPPPGALGSFALAAAANGYLGAGAGGGAGGGGG
220 230 240 250 260 270
380 390 400 410 420 430
pF1KE2 PLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGAR
280 290 300 310 320 330
440 450 460 470 480 490
pF1KE2 IQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVRASNPQKVG
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVRASNPQKVG
340 350 360 370 380
>>XP_016882327 (OMIM: 601991) PREDICTED: RNA-binding pro (383 aa)
initn: 2416 init1: 2416 opt: 2416 Z-score: 1392.3 bits: 266.7 E(85289): 8.2e-71
Smith-Waterman score: 2416; 100.0% identity (100.0% similar) in 383 aa overlap (110-492:1-383)
80 90 100 110 120 130
pF1KE2 ERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPN
::::::::::::::::::::::::::::::
XP_016 MTKPEVVNILQPQTTMNPDRAKQAKLIVPN
10 20 30
140 150 160 170 180 190
pF1KE2 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQK
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE2 VQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGPAGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGPAGLA
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE2 GVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLGLGLNSAAASGVLAAVAAGANPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLGLGLNSAAASGVLAAVAAGANPA
160 170 180 190 200 210
320 330 340 350 360 370
pF1KE2 AAAAANLLASYAGEAGAGPAGGAAPPPPPPPGALGSFALAAAANGYLGAGAGGGAGGGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AAAAANLLASYAGEAGAGPAGGAAPPPPPPPGALGSFALAAAANGYLGAGAGGGAGGGGG
220 230 240 250 260 270
380 390 400 410 420 430
pF1KE2 PLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGAR
280 290 300 310 320 330
440 450 460 470 480 490
pF1KE2 IQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVRASNPQKVG
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVRASNPQKVG
340 350 360 370 380
>>XP_006723293 (OMIM: 601991) PREDICTED: RNA-binding pro (383 aa)
initn: 2416 init1: 2416 opt: 2416 Z-score: 1392.3 bits: 266.7 E(85289): 8.2e-71
Smith-Waterman score: 2416; 100.0% identity (100.0% similar) in 383 aa overlap (110-492:1-383)
80 90 100 110 120 130
pF1KE2 ERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPN
::::::::::::::::::::::::::::::
XP_006 MTKPEVVNILQPQTTMNPDRAKQAKLIVPN
10 20 30
140 150 160 170 180 190
pF1KE2 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQK
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE2 VQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGPAGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGPAGLA
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE2 GVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLGLGLNSAAASGVLAAVAAGANPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLGLGLNSAAASGVLAAVAAGANPA
160 170 180 190 200 210
320 330 340 350 360 370
pF1KE2 AAAAANLLASYAGEAGAGPAGGAAPPPPPPPGALGSFALAAAANGYLGAGAGGGAGGGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AAAAANLLASYAGEAGAGPAGGAAPPPPPPPGALGSFALAAAANGYLGAGAGGGAGGGGG
220 230 240 250 260 270
380 390 400 410 420 430
pF1KE2 PLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGAR
280 290 300 310 320 330
440 450 460 470 480 490
pF1KE2 IQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVRASNPQKVG
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVRASNPQKVG
340 350 360 370 380
>>NP_006480 (OMIM: 602157) RNA-binding protein Nova-1 is (483 aa)
initn: 1959 init1: 1341 opt: 1735 Z-score: 1005.3 bits: 195.4 E(85289): 3e-49
Smith-Waterman score: 2245; 75.2% identity (89.4% similar) in 492 aa overlap (4-492:21-483)
10 20 30 40
pF1KE2 MEPEAPDSRKRPLETPPEVVCTKRSNTGEEGEYFLKVLIPSYA
. :::::::::.:::. :::.::::.:.:::::::::::
NP_006 MMAAAPIQQNGTHTGVPIDLDPPDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE2 AGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKV
:::::::::::::::::::::::::::::::::::::::::.:::.:::::::.:::::.
NP_006 AGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKI
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE2 REIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAW
::.:: ..: : :.:::::::.:::: ::.:.::::::::::::::::::::::::::::
NP_006 REMPQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAW
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE2 VQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISYANVAGPVAN
:::::::.::::::::::::::::: .::: :.::.::::::.::::::::::.:::::
NP_006 VQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISYANVTGPVAN
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE2 SNPTGSPYASPADVLPAAAAASAAAASGLLGPAGLAGVGAFPAALPAFSGTDLLAISTAL
:::::::::. :.::: .::::.:::: :.::::.::::.: .:.:.::.::..::
NP_006 SNPTGSPYANTAEVLP-----TAAAAAGLLGHANLAGVAAFPAVLSGFTGNDLVAITSAL
250 260 270 280 290
290 300 310 320 330 340
pF1KE2 NTLASYGYNTNSLGLGLNSAAASGVLAAVAAGANPAAAAAANLLASYAGEAGAG--PAGG
::::::::: :.:::::..:::.:.:::.::.:::::::: ::::.::.::.:. :::
NP_006 NTLASYGYNLNTLGLGLSQAAATGALAAAAASANPAAAAA-NLLATYASEASASGSTAGG
300 310 320 330 340 350
350 360 370 380 390 400
pF1KE2 AAPPPPPPPGALGSFALAAAA-NGYLGAGAGGGAGGGGGPLVAAAAAAGAAGGFLTAEKL
.: ::::.: :.:: :::.::.. ::.:.: .: .::
NP_006 TAGTF-----ALGSLAAATAATNGYFGAAS---------PLAASA--------ILGTEK-
360 370 380 390
410 420 430 440 450 460
pF1KE2 AAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTIT
.....:..::::::::::::::::::::::::::::::::::::::::.::::::.::::
NP_006 STDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTIT
400 410 420 430 440 450
470 480 490
pF1KE2 GSPAATQAAQYLISQRVTYEQGVRASNPQKVG
:.:::::::::::.::.::::::::.::::::
NP_006 GTPAATQAAQYLITQRITYEQGVRAANPQKVG
460 470 480
>>XP_016876832 (OMIM: 602157) PREDICTED: RNA-binding pro (446 aa)
initn: 1833 init1: 1215 opt: 1609 Z-score: 934.2 bits: 182.2 E(85289): 2.7e-45
Smith-Waterman score: 2119; 75.4% identity (89.5% similar) in 467 aa overlap (29-492:9-446)
10 20 30 40 50 60
pF1KE2 MEPEAPDSRKRPLETPPEVVCTKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQK
:.:.::::::::::::::::::::::::::::
XP_016 MHPMHRSREDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQK
10 20 30 40
70 80 90 100 110 120
pF1KE2 ETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQ
::::::::::::::::::::::::.:::.:::::::.:::::.::.:: ..: : :.:::
XP_016 ETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKIREMPQNVAKTEPVSILQ
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE2 PQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVV
::::.:::: ::.:.:::::::::::::::::::::::::::::::::::.:::::::::
XP_016 PQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVV
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE2 TVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPA
:::::::: .::: :.::.::::::.::::::::::.::::::::::::::. :.:::
XP_016 TVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLP-
170 180 190 200 210
250 260 270 280 290 300
pF1KE2 AAAASAAAASGLLGPAGLAGVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLGLGL
.::::.:::: :.::::.::::.: .:.:.::.::..::::::::::: :.:::::
XP_016 ----TAAAAAGLLGHANLAGVAAFPAVLSGFTGNDLVAITSALNTLASYGYNLNTLGLGL
220 230 240 250 260 270
310 320 330 340 350
pF1KE2 NSAAASGVLAAVAAGANPAAAAAANLLASYAGEAGAG--PAGGAAPPPPPPPGALGSFAL
..:::.:.:::.::.:::::::: ::::.::.::.:. :::.: ::::.:
XP_016 SQAAATGALAAAAASANPAAAAA-NLLATYASEASASGSTAGGTAGTF-----ALGSLAA
280 290 300 310 320
360 370 380 390 400 410
pF1KE2 AAAA-NGYLGAGAGGGAGGGGGPLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENL
:.:: :::.::.. ::.:.: .: .:: .....:..:::::::::
XP_016 ATAATNGYFGAAS---------PLAASA--------ILGTEK-STDGSKDVVEIAVPENL
330 340 350 360 370
420 430 440 450 460 470
pF1KE2 VGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRV
:::::::::::::::::::::::::::::::.::::::.:::::.:::::::::::.::.
XP_016 VGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRI
380 390 400 410 420 430
480 490
pF1KE2 TYEQGVRASNPQKVG
::::::::.::::::
XP_016 TYEQGVRAANPQKVG
440
>>NP_002506 (OMIM: 602157) RNA-binding protein Nova-1 is (507 aa)
initn: 1573 init1: 715 opt: 1281 Z-score: 747.7 bits: 147.9 E(85289): 6.6e-35
Smith-Waterman score: 2187; 71.7% identity (85.3% similar) in 516 aa overlap (4-492:21-507)
10 20 30 40
pF1KE2 MEPEAPDSRKRPLETPPEVVCTKRSNTGEEGEYFLKVLIPSYA
. :::::::::.:::. :::.::::.:.:::::::::::
NP_002 MMAAAPIQQNGTHTGVPIDLDPPDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE2 AGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKV
:::::::::::::::::::::::::::::::::::::::::.:::.:::::::.:::::.
NP_002 AGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKI
70 80 90 100 110 120
110 120 130
pF1KE2 REIPQAMTKPEVVNILQPQTTMNPDRAKQA------------------------KLIVPN
::.:: ..: : :.:::::::.:::: ::. :.::::
NP_002 REMPQNVAKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTTSRANQVKIIVPN
130 140 150 160 170 180
140 150 160 170 180 190
pF1KE2 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSAIVQK
:::::::::::::::::::::::::::::::.::::::::::::::::: .::: :.::
NP_002 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQK
190 200 210 220 230 240
200 210 220 230 240 250
pF1KE2 VQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGPAGLA
.::::::.::::::::::.::::::::::::::. :.::: .::::.:::: :.::
NP_002 IQEDPQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLP-----TAAAAAGLLGHANLA
250 260 270 280 290
260 270 280 290 300 310
pF1KE2 GVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLGLGLNSAAASGVLAAVAAGANPA
::.::::.: .:.:.::.::..::::::::::: :.:::::..:::.:.:::.::.::::
NP_002 GVAAFPAVLSGFTGNDLVAITSALNTLASYGYNLNTLGLGLSQAAATGALAAAAASANPA
300 310 320 330 340 350
320 330 340 350 360 370
pF1KE2 AAAAANLLASYAGEAGAG--PAGGAAPPPPPPPGALGSFALAAAA-NGYLGAGAGGGAGG
:::: ::::.::.::.:. :::.: ::::.: :.:: :::.::..
NP_002 AAAA-NLLATYASEASASGSTAGGTAGTF-----ALGSLAAATAATNGYFGAAS------
360 370 380 390 400
380 390 400 410 420 430
pF1KE2 GGGPLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELT
::.:.: .: .:: .....:..::::::::::::::::::::::::::::
NP_002 ---PLAASA--------ILGTEK-STDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELT
410 420 430 440 450
440 450 460 470 480 490
pF1KE2 GARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVRASNPQKVG
::::::::::::.::::::.:::::.:::::::::::.::.::::::::.::::::
NP_002 GARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRITYEQGVRAANPQKVG
460 470 480 490 500
>>XP_016876838 (OMIM: 602157) PREDICTED: RNA-binding pro (361 aa)
initn: 1371 init1: 753 opt: 1147 Z-score: 673.4 bits: 133.6 E(85289): 9.1e-31
Smith-Waterman score: 1657; 72.1% identity (87.4% similar) in 390 aa overlap (106-492:1-361)
80 90 100 110 120 130
pF1KE2 PGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKL
.:: ..: : :.:::::::.:::: ::.:.
XP_016 MPQNVAKTEPVSILQPQTTVNPDRIKQVKI
10 20 30
140 150 160 170 180 190
pF1KE2 IVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSA
:::::::::::::::::::::::::::::::::::.::::::::::::::::: .:::
XP_016 IVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVEL
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE2 IVQKVQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGP
:.::.::::::.::::::::::.::::::::::::::. :.::: .::::.::::
XP_016 IIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLP-----TAAAAAGLLGH
100 110 120 130 140
260 270 280 290 300 310
pF1KE2 AGLAGVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLGLGLNSAAASGVLAAVAAG
:.::::.::::.: .:.:.::.::..::::::::::: :.:::::..:::.:.:::.::.
XP_016 ANLAGVAAFPAVLSGFTGNDLVAITSALNTLASYGYNLNTLGLGLSQAAATGALAAAAAS
150 160 170 180 190 200
320 330 340 350 360 370
pF1KE2 ANPAAAAAANLLASYAGEAGAG--PAGGAAPPPPPPPGALGSFALAAAA-NGYLGAGAGG
:::::::: ::::.::.::.:. :::.: ::::.: :.:: :::.::..
XP_016 ANPAAAAA-NLLATYASEASASGSTAGGTAGTF-----ALGSLAAATAATNGYFGAAS--
210 220 230 240 250
380 390 400 410 420 430
pF1KE2 GAGGGGGPLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEY
::.:.: .: .:: .....:..::::::::::::::::::::::::
XP_016 -------PLAASA--------ILGTEK-STDGSKDVVEIAVPENLVGAILGKGGKTLVEY
260 270 280 290 300
440 450 460 470 480 490
pF1KE2 QELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVRASNPQKVG
::::::::::::::::.::::::.:::::.:::::::::::.::.::::::::.::::::
XP_016 QELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRITYEQGVRAANPQKVG
310 320 330 340 350 360
>>XP_011535102 (OMIM: 602157) PREDICTED: RNA-binding pro (361 aa)
initn: 1371 init1: 753 opt: 1147 Z-score: 673.4 bits: 133.6 E(85289): 9.1e-31
Smith-Waterman score: 1657; 72.1% identity (87.4% similar) in 390 aa overlap (106-492:1-361)
80 90 100 110 120 130
pF1KE2 PGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKL
.:: ..: : :.:::::::.:::: ::.:.
XP_011 MPQNVAKTEPVSILQPQTTVNPDRIKQVKI
10 20 30
140 150 160 170 180 190
pF1KE2 IVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAVSA
:::::::::::::::::::::::::::::::::::.::::::::::::::::: .:::
XP_011 IVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVEL
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE2 IVQKVQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGP
:.::.::::::.::::::::::.::::::::::::::. :.::: .::::.::::
XP_011 IIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLP-----TAAAAAGLLGH
100 110 120 130 140
260 270 280 290 300 310
pF1KE2 AGLAGVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLGLGLNSAAASGVLAAVAAG
:.::::.::::.: .:.:.::.::..::::::::::: :.:::::..:::.:.:::.::.
XP_011 ANLAGVAAFPAVLSGFTGNDLVAITSALNTLASYGYNLNTLGLGLSQAAATGALAAAAAS
150 160 170 180 190 200
320 330 340 350 360 370
pF1KE2 ANPAAAAAANLLASYAGEAGAG--PAGGAAPPPPPPPGALGSFALAAAA-NGYLGAGAGG
:::::::: ::::.::.::.:. :::.: ::::.: :.:: :::.::..
XP_011 ANPAAAAA-NLLATYASEASASGSTAGGTAGTF-----ALGSLAAATAATNGYFGAAS--
210 220 230 240 250
380 390 400 410 420 430
pF1KE2 GAGGGGGPLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEY
::.:.: .: .:: .....:..::::::::::::::::::::::::
XP_011 -------PLAASA--------ILGTEK-STDGSKDVVEIAVPENLVGAILGKGGKTLVEY
260 270 280 290 300
440 450 460 470 480 490
pF1KE2 QELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVRASNPQKVG
::::::::::::::::.::::::.:::::.:::::::::::.::.::::::::.::::::
XP_011 QELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRITYEQGVRAANPQKVG
310 320 330 340 350 360
492 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 11 17:00:52 2016 done: Fri Nov 11 17:00:54 2016
Total Scan time: 11.580 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]