FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2623, 227 aa
  1>>>pF1KE2623 227 - 227 aa - 227 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8020+/-0.00106; mu= -0.3605+/- 0.063
 mean_var=223.0261+/-44.789, 0's: 0 Z-trim(109.8): 26  B-trim: 0 in 0/54
 Lambda= 0.085881
 statistics sampled from 11102 (11112) to 11102 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.341), width:  16
 Scan time:  1.440

The best scores are:                                      opt bits E(32554)
CCDS5828.1 CHCHD3 gene_id:54927|Hs108|chr7         ( 227) 1440 190.6 7.1e-49


>>CCDS5828.1 CHCHD3 gene_id:54927|Hs108|chr7              (227 aa)
 initn: 1440 init1: 1440 opt: 1440  Z-score: 990.9  bits: 190.6 E(32554): 7.1e-49
Smith-Waterman score: 1440; 100.0% identity (100.0% similar) in 227 aa overlap (1-227:1-227)

               10        20        30        40        50        60
pF1KE2 MGGTTSTRRVTFEADENENITVVKGIRLSENVIDRMKESSPSGSKSQRYSGAYGASVSDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MGGTTSTRRVTFEADENENITVVKGIRLSENVIDRMKESSPSGSKSQRYSGAYGASVSDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 ELKRRVAEELALEQAKKESEDQKRLKQAKELDRERAAANEQLTRAILRERICSEEERAKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ELKRRVAEELALEQAKKESEDQKRLKQAKELDRERAAANEQLTRAILRERICSEEERAKA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 KHLARQLEEKDRVLKKQDAFYKEQLARLEERSSEFYRVTTEQYQKAAEEVEAKFKRYESH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KHLARQLEEKDRVLKKQDAFYKEQLARLEERSSEFYRVTTEQYQKAAEEVEAKFKRYESH
              130       140       150       160       170       180

              190       200       210       220       
pF1KE2 PVCADLQAKILQCYRENTHQTLKCSALATQYMHCVNHAKQSMLEKGG
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 PVCADLQAKILQCYRENTHQTLKCSALATQYMHCVNHAKQSMLEKGG
              190       200       210       220       




227 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 17:16:10 2016 done: Tue Nov  8 17:16:10 2016
 Total Scan time:  1.440 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]