FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2612, 385 aa
  1>>>pF1KE2612 385 - 385 aa - 385 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5546+/-0.000441; mu= 15.4117+/- 0.027
 mean_var=70.1388+/-14.195, 0's: 0 Z-trim(109.1): 27  B-trim: 20 in 1/49
 Lambda= 0.153142
 statistics sampled from 17281 (17282) to 17281 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.558), E-opt: 0.2 (0.203), width:  16
 Scan time:  5.900

The best scores are:                                      opt bits E(85289)
NP_057030 (OMIM: 605757) protein pelota homolog [H ( 385) 2502 562.4 6.4e-160


>>NP_057030 (OMIM: 605757) protein pelota homolog [Homo   (385 aa)
 initn: 2502 init1: 2502 opt: 2502  Z-score: 2992.1  bits: 562.4 E(85289): 6.4e-160
Smith-Waterman score: 2502; 99.7% identity (100.0% similar) in 385 aa overlap (1-385:1-385)

               10        20        30        40        50        60
pF1KE2 MKLVRKNIEKDNAGQVTLVPEEPEDMWHTYNLVQVGDSLRASTIRKVQTESSTGSVGSNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MKLVRKNIEKDNAGQVTLVPEEPEDMWHTYNLVQVGDSLRASTIRKVQTESSTGSVGSNR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 VRTTLTLCVEAIDFDSQACQLRVKGTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 VRTTLTLCVEAIDFDSQACQLRVKGTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 VLERIEQACDPAWSADVAAVVMQEGLAHICLVTPSMTLTRAKVEVNIPRKRKGNCSQHDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 VLERIEQACDPAWSADVAAVVMQEGLAHICLVTPSMTLTRAKVEVNIPRKRKGNCSQHDR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 ALERFYEQVVQAIQRHIHFDVVKCILVASPGFVREQFCDYMFQQAVKTDNKLLLENRSKF
       ::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
NP_057 ALERFYEQVVQAIQRHIHFDVVKCILVASPGFVREQFCDYLFQQAVKTDNKLLLENRSKF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 LQVHASSGHKYSLKEALCDPTVASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 LQVHASSGHKYSLKEALCDPTVASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 KANEAMAIDTLLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSSLHVSGEQLSQLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 KANEAMAIDTLLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSSLHVSGEQLSQLT
              310       320       330       340       350       360

              370       380     
pF1KE2 GVAAILRFPVPELSDQEGDSSSEED
       :::::::::::::::::::::::::
NP_057 GVAAILRFPVPELSDQEGDSSSEED
              370       380     




385 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 17:05:25 2016 done: Tue Nov  8 17:05:26 2016
 Total Scan time:  5.900 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]