Result of FASTA (ccds) for
pFN21AE2599
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2599, 406 aa
1>>>pF1KE2599 406 - 406 aa - 406 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7918+/-0.000794; mu= 14.9942+/- 0.048
mean_var=78.7803+/-16.092, 0's: 0 Z-trim(109.5): 19 B-trim: 366 in 1/49
Lambda= 0.144499
statistics sampled from 10903 (10919) to 10903 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.697), E-opt: 0.2 (0.335), width: 16
Scan time: 2.240
The best scores are: opt bits E(32554)
CCDS13492.1 MTG2 gene_id:26164|Hs108|chr20 ( 406) 2737 579.9 1.4e-165
CCDS5617.1 GTPBP10 gene_id:85865|Hs108|chr7 ( 387) 485 110.5 2.9e-24
CCDS43614.1 GTPBP10 gene_id:85865|Hs108|chr7 ( 308) 393 91.2 1.4e-18
>>CCDS13492.1 MTG2 gene_id:26164|Hs108|chr20 (406 aa)
initn: 2737 init1: 2737 opt: 2737 Z-score: 3086.1 bits: 579.9 E(32554): 1.4e-165
Smith-Waterman score: 2737; 100.0% identity (100.0% similar) in 406 aa overlap (1-406:1-406)
10 20 30 40 50 60
pF1KE2 MAPARCFSARLRTVFQGVGHWALSTWAGLKPSRLLPQRASPRLLSVGRADLAKHQELPGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAPARCFSARLRTVFQGVGHWALSTWAGLKPSRLLPQRASPRLLSVGRADLAKHQELPGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 KLLSEKKLKRYFVDYRRVLVCGGNGGAGASCFHSEPRKEFGGPDGGDGGNGGHVILRVDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KLLSEKKLKRYFVDYRRVLVCGGNGGAGASCFHSEPRKEFGGPDGGDGGNGGHVILRVDQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 QVKSLSSVLSRYQGFSGEDGGSKNCFGRSGAVLYIRVPVGTLVKEGGRVVADLSCVGDEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QVKSLSSVLSRYQGFSGEDGGSKNCFGRSGAVLYIRVPVGTLVKEGGRVVADLSCVGDEY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 IAALGGAGGKGNRFFLANNNRAPVTCTPGQPGQQRVLHLELKTVAHAGMVGFPNAGKSSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IAALGGAGGKGNRFFLANNNRAPVTCTPGQPGQQRVLHLELKTVAHAGMVGFPNAGKSSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 LRAISNARPAVASYPFTTLKPHVGIVHYEGHLQIAVADIPGIIRGAHQNRGLGSAFLRHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LRAISNARPAVASYPFTTLKPHVGIVHYEGHLQIAVADIPGIIRGAHQNRGLGSAFLRHI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 ERCRFLLFVVDLSQPEPWTQVDDLKYELEMYEKGLSARPHAIVANKIDLPEAQANLSQLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ERCRFLLFVVDLSQPEPWTQVDDLKYELEMYEKGLSARPHAIVANKIDLPEAQANLSQLR
310 320 330 340 350 360
370 380 390 400
pF1KE2 DHLGQEVIVLSALTGENLEQLLLHLKVLYDAYAEAELGQGRQPLRW
::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DHLGQEVIVLSALTGENLEQLLLHLKVLYDAYAEAELGQGRQPLRW
370 380 390 400
>>CCDS5617.1 GTPBP10 gene_id:85865|Hs108|chr7 (387 aa)
initn: 635 init1: 447 opt: 485 Z-score: 549.2 bits: 110.5 E(32554): 2.9e-24
Smith-Waterman score: 673; 39.2% identity (62.7% similar) in 367 aa overlap (68-396:9-350)
40 50 60 70 80 90
pF1KE2 RASPRLLSVGRADLAKHQELPGKKLLSEKKLKRY--FVDYRRVLVCGGNGGAGASCFHSE
...: :.: :... ::.:: :
CCDS56 MVHCSCVLFRKYGNFIDKLRLFTRGGSGGMGY------
10 20 30
100 110 120 130 140 150
pF1KE2 PRKEFGGPDGGDGGNGGHVILRVDQQVKSLSSVLSRY--QGF-SGEDGGSKNCF--GRSG
:: ::.::.:: : . : :. .:... .:: . : .: ..:: : .:
CCDS56 PRL------GGEGGKGGDVWV-VAQNRMTLKQLKDRYPRKRFVAGVGANSKISALKGSKG
40 50 60 70 80
160 170 180 190 200
pF1KE2 AVLYIRVPVG-TLVKEGGRVVADLSCVGDEYIAALGGAGGKGNRFFLANNNRAPVTCTPG
: :::: ... :.:.....:. .:. ..: :: ::: :: :.
CCDS56 KDCEIPVPVGISVTDENGKIIGELNKENDRILVAQGGLGGKLLTNFL------PL-----
90 100 110 120 130
210 220 230 240 250 260
pF1KE2 QPGQQRVLHLELKTVAHAGMVGFPNAGKSSLLRAISNARPAVASYPFTTLKPHVGIVHYE
::.:..::.:: .: .:.:::::::::::: .:.:.::.:.: ::::::..: . :
CCDS56 -KGQKRIIHLDLKLIADVGLVGFPNAGKSSLLSCVSHAKPAIADYAFTTLKPELGKIMYS
140 150 160 170 180 190
270 280 290 300 310 320
pF1KE2 GHLQIAVADIPGIIRGAHQNRGLGSAFLRHIERCRFLLFVVDLS--QPEPWTQVDD----
::.:::.::.:.:::.:.:.: ::.:::: : ::::::.: : ::
CCDS56 DFKQISVADLPGLIEGAHMNKGMGHKFLKHIERTRQLLFVVDISGFQLSSHTQYRTAFET
200 210 220 230 240 250
330 340 350 360
pF1KE2 ---LKYELEMYEKGLSARPHAIVANKIDLPEAQAN----LSQLRD-----HLG-------
: :::.:.. :...: ...::.:::.:: . .:::.. ::
CCDS56 IILLTKELELYKEELQTKPALLAVNKMDLPDAQDKFHELMSQLQNPKDFLHLFEKNMIPE
260 270 280 290 300 310
370 380 390 400
pF1KE2 -----QEVIVLSALTGENLEQLLLHLKVLYDAYAEAELGQGRQPLRW
:..: .::.:::..:.: .. : :. :
CCDS56 RTVEFQHIIPISAVTGEGIEELKNCIRKSLDEQANQENDALHKKQLLNLWISDTMSSTEP
320 330 340 350 360 370
CCDS56 PSKHAVTTSKMDII
380
>>CCDS43614.1 GTPBP10 gene_id:85865|Hs108|chr7 (308 aa)
initn: 513 init1: 358 opt: 393 Z-score: 447.0 bits: 91.2 E(32554): 1.4e-18
Smith-Waterman score: 482; 40.6% identity (62.3% similar) in 244 aa overlap (184-396:35-271)
160 170 180 190 200 210
pF1KE2 YIRVPVGTLVKEGGRVVADLSCVGDEYIAALGGAGGKGNRFFLANNNRAPVTCTPGQPGQ
::: ::::. ... .:: . . .
CCDS43 SCVLFRKYGNFIDKLRLFTRGGSGGMGYPRLGGEGGKGGDVWVVAQNRMTLKQLKDRYPR
10 20 30 40 50 60
220 230 240 250 260 270
pF1KE2 QRVLHLELKTVAHAGMVG-FPNAGKSSLLRAISNARPAVASYPFTTLKPHVGIVHYEGHL
.: :: .: . :::::::::: .:.:.::.:.: ::::::..: . :
CCDS43 KRF-------VAGVGANSKFPNAGKSSLLSCVSHAKPAIADYAFTTLKPELGKIMYSDFK
70 80 90 100 110
280 290 300 310 320
pF1KE2 QIAVADIPGIIRGAHQNRGLGSAFLRHIERCRFLLFVVDLS--QPEPWTQVDD-------
::.:::.::.:.:::.:.:.: ::.:::: : ::::::.: : ::
CCDS43 QISVADLPGLIEGAHMNKGMGHKFLKHIERTRQLLFVVDISGFQLSSHTQYRTAFETIIL
120 130 140 150 160 170
330 340 350 360
pF1KE2 LKYELEMYEKGLSARPHAIVANKIDLPEAQAN----LSQLRD-----HLG----------
: :::.:.. :...: ...::.:::.:: . .:::.. ::
CCDS43 LTKELELYKEELQTKPALLAVNKMDLPDAQDKFHELMSQLQNPKDFLHLFEKNMIPERTV
180 190 200 210 220 230
370 380 390 400
pF1KE2 --QEVIVLSALTGENLEQLLLHLKVLYDAYAEAELGQGRQPLRW
:..: .::.:::..:.: .. : :. :
CCDS43 EFQHIIPISAVTGEGIEELKNCIRKSLDEQANQENDALHKKQLLNLWISDTMSSTEPPSK
240 250 260 270 280 290
CCDS43 HAVTTSKMDII
300
406 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 16:45:49 2016 done: Tue Nov 8 16:45:49 2016
Total Scan time: 2.240 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]