FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2572, 125 aa
  1>>>pF1KE2572 125 - 125 aa - 125 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4204+/-0.000899; mu= 8.5014+/- 0.054
 mean_var=46.6206+/- 9.340, 0's: 0 Z-trim(102.9): 22  B-trim: 0 in 0/48
 Lambda= 0.187839
 statistics sampled from 7177 (7182) to 7177 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.609), E-opt: 0.2 (0.221), width:  16
 Scan time:  1.530

The best scores are:                                      opt bits E(32554)
CCDS1128.1 LAMTOR2 gene_id:28956|Hs108|chr1        ( 125)  790 221.6 9.7e-59
CCDS44243.1 LAMTOR2 gene_id:28956|Hs108|chr1       (  95)  496 142.0 7.1e-35


>>CCDS1128.1 LAMTOR2 gene_id:28956|Hs108|chr1             (125 aa)
 initn: 790 init1: 790 opt: 790  Z-score: 1168.0  bits: 221.6 E(32554): 9.7e-59
Smith-Waterman score: 790; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125)

               10        20        30        40        50        60
pF1KE2 MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 NQAFNEDNLKFILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NQAFNEDNLKFILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLT
               70        80        90       100       110       120

            
pF1KE2 QVAAS
       :::::
CCDS11 QVAAS
            

>>CCDS44243.1 LAMTOR2 gene_id:28956|Hs108|chr1            (95 aa)
 initn: 496 init1: 496 opt: 496  Z-score: 739.6  bits: 142.0 E(32554): 7.1e-35
Smith-Waterman score: 532; 76.0% identity (76.0% similar) in 125 aa overlap (1-125:1-95)

               10        20        30        40        50        60
pF1KE2 MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 NQAFNEDNLKFILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLT
       :::::::::::::::::                              :::::::::::::
CCDS44 NQAFNEDNLKFILMDCM------------------------------AQALVQYLEEPLT
               70                                      80        90

            
pF1KE2 QVAAS
       :::::
CCDS44 QVAAS
            




125 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:05:18 2016 done: Sat Nov  5 06:05:19 2016
 Total Scan time:  1.530 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]