Result of FASTA (ccds) for
pFN21AE2559
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2559, 147 aa
1>>>pF1KE2559 147 - 147 aa - 147 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1682+/-0.000602; mu= 12.4176+/- 0.036
mean_var=60.2680+/-11.976, 0's: 0 Z-trim(111.5): 13 B-trim: 74 in 1/49
Lambda= 0.165208
statistics sampled from 12380 (12390) to 12380 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.381), width: 16
Scan time: 1.830
The best scores are: opt bits E(32554)
CCDS31074.1 MAP1LC3C gene_id:440738|Hs108|chr1 ( 147) 969 238.5 1.1e-63
CCDS13238.1 MAP1LC3A gene_id:84557|Hs108|chr20 ( 121) 466 118.5 1.2e-27
CCDS10960.1 MAP1LC3B gene_id:81631|Hs108|chr16 ( 125) 443 113.1 5.5e-26
CCDS41841.1 MAP1LC3B2 gene_id:643246|Hs108|chr12 ( 125) 432 110.4 3.4e-25
CCDS13237.1 MAP1LC3A gene_id:84557|Hs108|chr20 ( 125) 399 102.6 7.9e-23
CCDS8620.1 GABARAPL1 gene_id:23710|Hs108|chr12 ( 117) 309 81.1 2.1e-16
CCDS10921.1 GABARAPL2 gene_id:11345|Hs108|chr16 ( 117) 306 80.4 3.5e-16
CCDS11092.1 GABARAP gene_id:11337|Hs108|chr17 ( 117) 296 78.0 1.8e-15
>>CCDS31074.1 MAP1LC3C gene_id:440738|Hs108|chr1 (147 aa)
initn: 969 init1: 969 opt: 969 Z-score: 1256.5 bits: 238.5 E(32554): 1.1e-63
Smith-Waterman score: 969; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KE2 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA
70 80 90 100 110 120
130 140
pF1KE2 SQETFGCLESAAPRDGSSLEDRPCNPL
:::::::::::::::::::::::::::
CCDS31 SQETFGCLESAAPRDGSSLEDRPCNPL
130 140
>>CCDS13238.1 MAP1LC3A gene_id:84557|Hs108|chr20 (121 aa)
initn: 466 init1: 466 opt: 466 Z-score: 609.9 bits: 118.5 E(32554): 1.2e-27
Smith-Waterman score: 466; 59.2% identity (85.0% similar) in 120 aa overlap (7-126:1-120)
10 20 30 40 50 60
pF1KE2 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV
.:: ::::::.:.: : .:: :: . :.::::..::: : :: ::::::::
CCDS13 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLV
10 20 30 40 50
70 80 90 100 110 120
pF1KE2 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA
:....:.....::: :. : :.::.::::..:.::.:. .:.::.. ::::::.::.::
CCDS13 PDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYA
60 70 80 90 100 110
130 140
pF1KE2 SQETFGCLESAAPRDGSSLEDRPCNPL
::::::
CCDS13 SQETFGF
120
>>CCDS10960.1 MAP1LC3B gene_id:81631|Hs108|chr16 (125 aa)
initn: 443 init1: 443 opt: 443 Z-score: 580.0 bits: 113.1 E(32554): 5.5e-26
Smith-Waterman score: 443; 55.0% identity (84.2% similar) in 120 aa overlap (7-126:1-120)
10 20 30 40 50 60
pF1KE2 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV
.:: . ::::... : :.: :: . :.::::..::: : :: ::::::::
CCDS10 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLV
10 20 30 40 50
70 80 90 100 110 120
pF1KE2 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA
:....:.....::: :. : :..::.::::..:.::.:. ..:.:.. ::::::.::.::
CCDS10 PDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYA
60 70 80 90 100 110
130 140
pF1KE2 SQETFGCLESAAPRDGSSLEDRPCNPL
::::::
CCDS10 SQETFGMKLSV
120
>>CCDS41841.1 MAP1LC3B2 gene_id:643246|Hs108|chr12 (125 aa)
initn: 432 init1: 432 opt: 432 Z-score: 565.9 bits: 110.4 E(32554): 3.4e-25
Smith-Waterman score: 432; 54.2% identity (83.3% similar) in 120 aa overlap (7-126:1-120)
10 20 30 40 50 60
pF1KE2 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV
.:: . ::::... : :.: :: . :.::::..::: : :: ::::::::
CCDS41 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLV
10 20 30 40 50
70 80 90 100 110 120
pF1KE2 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA
:....:.....::: :. : :..::.::::..:.::.:. ..:.:.. ::::::.::. :
CCDS41 PDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCA
60 70 80 90 100 110
130 140
pF1KE2 SQETFGCLESAAPRDGSSLEDRPCNPL
::::::
CCDS41 SQETFGMKLSV
120
>>CCDS13237.1 MAP1LC3A gene_id:84557|Hs108|chr20 (125 aa)
initn: 399 init1: 399 opt: 399 Z-score: 523.4 bits: 102.6 E(32554): 7.9e-23
Smith-Waterman score: 399; 57.9% identity (84.1% similar) in 107 aa overlap (20-126:18-124)
10 20 30 40 50 60
pF1KE2 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV
: : .:: :: . :.::::..::: : :: ::::::::
CCDS13 MKMRFFSSPCGKAAVDPADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLV
10 20 30 40 50
70 80 90 100 110 120
pF1KE2 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA
:....:.....::: :. : :.::.::::..:.::.:. .:.::.. ::::::.::.::
CCDS13 PDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYA
60 70 80 90 100 110
130 140
pF1KE2 SQETFGCLESAAPRDGSSLEDRPCNPL
::::::
CCDS13 SQETFGF
120
>>CCDS8620.1 GABARAPL1 gene_id:23710|Hs108|chr12 (117 aa)
initn: 308 init1: 142 opt: 309 Z-score: 407.9 bits: 81.1 E(32554): 2.1e-16
Smith-Waterman score: 309; 39.5% identity (76.3% similar) in 114 aa overlap (13-126:5-116)
10 20 30 40 50 60
pF1KE2 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV
.:. . . :..: :: :.:...::.::. :. .: ::: :.::
CCDS86 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKAR-VPDLDKRKYLV
10 20 30 40 50
70 80 90 100 110 120
pF1KE2 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA
:..::. :: .::.:. :: .:....::: .. ::::...:.: ..:: :.:..:.
CCDS86 PSDLTVGQFYFLIRKRIHLRPEDALFFFVNN-TIPPTSATMGQLYEDNHEEDYFLYVAYS
60 70 80 90 100 110
130 140
pF1KE2 SQETFGCLESAAPRDGSSLEDRPCNPL
.. ..:
CCDS86 DESVYGK
>>CCDS10921.1 GABARAPL2 gene_id:11345|Hs108|chr16 (117 aa)
initn: 303 init1: 115 opt: 306 Z-score: 404.0 bits: 80.4 E(32554): 3.5e-16
Smith-Waterman score: 306; 43.0% identity (78.1% similar) in 114 aa overlap (13-126:5-116)
10 20 30 40 50 60
pF1KE2 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV
::. .:: : : : ::::.:...::.::. .. .:: :.::
CCDS10 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVD-IDKRKYLV
10 20 30 40 50
70 80 90 100 110 120
pF1KE2 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA
:...:..::. :::.:. : . .:..:.:. :.. . : ::...:. ::::::.:..:.
CCDS10 PSDITVAQFMWIIRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKDEDGFLYVAYS
60 70 80 90 100 110
130 140
pF1KE2 SQETFGCLESAAPRDGSSLEDRPCNPL
...:::
CCDS10 GENTFGF
>>CCDS11092.1 GABARAP gene_id:11337|Hs108|chr17 (117 aa)
initn: 308 init1: 138 opt: 296 Z-score: 391.1 bits: 78.0 E(32554): 1.8e-15
Smith-Waterman score: 296; 38.6% identity (76.3% similar) in 114 aa overlap (13-126:5-116)
10 20 30 40 50 60
pF1KE2 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV
.:... . :. : :: :.:...::.::. :. . ::: :.::
CCDS11 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKAR-IGDLDKKKYLV
10 20 30 40 50
70 80 90 100 110 120
pF1KE2 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA
:..::. :: .::.:. ::: .:....::: . ::::...:.....:: :.:..:.
CCDS11 PSDLTVGQFYFLIRKRIHLRAEDALFFFVNN-VIPPTSATMGQLYQEHHEEDFFLYIAYS
60 70 80 90 100 110
130 140
pF1KE2 SQETFGCLESAAPRDGSSLEDRPCNPL
.. ..:
CCDS11 DESVYGL
147 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 21:30:55 2016 done: Fri Nov 4 21:30:55 2016
Total Scan time: 1.830 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]