FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2535, 281 aa 1>>>pF1KE2535 281 - 281 aa - 281 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9776+/-0.000785; mu= 16.9191+/- 0.047 mean_var=62.8045+/-12.514, 0's: 0 Z-trim(107.1): 15 B-trim: 0 in 0/48 Lambda= 0.161837 statistics sampled from 9386 (9394) to 9386 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.289), width: 16 Scan time: 1.930 The best scores are: opt bits E(32554) CCDS10870.1 HAS3 gene_id:3038|Hs108|chr16 ( 281) 1873 445.7 1.7e-125 CCDS10871.1 HAS3 gene_id:3038|Hs108|chr16 ( 553) 1634 390.1 1.9e-108 CCDS6335.1 HAS2 gene_id:3037|Hs108|chr8 ( 552) 1041 251.6 9e-67 CCDS74436.1 HAS1 gene_id:3036|Hs108|chr19 ( 577) 361 92.9 5.8e-19 CCDS12838.1 HAS1 gene_id:3036|Hs108|chr19 ( 578) 361 92.9 5.8e-19 >>CCDS10870.1 HAS3 gene_id:3038|Hs108|chr16 (281 aa) initn: 1873 init1: 1873 opt: 1873 Z-score: 2366.4 bits: 445.7 E(32554): 1.7e-125 Smith-Waterman score: 1873; 100.0% identity (100.0% similar) in 281 aa overlap (1-281:1-281) 10 20 30 40 50 60 pF1KE2 MPVQLTTALRVVGTSLFALAVLGGILAAYVTGYQFIHTEKHYLSFGLYGAILGLHLLIQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MPVQLTTALRVVGTSLFALAVLGGILAAYVTGYQFIHTEKHYLSFGLYGAILGLHLLIQS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 LFAFLEHRRMRRAGQALKLPSPRRGSVALCIAAYQEDPDYLRKCLRSAQRISFPDLKVVM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 LFAFLEHRRMRRAGQALKLPSPRRGSVALCIAAYQEDPDYLRKCLRSAQRISFPDLKVVM 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 VVDGNRQEDAYMLDIFHEVLGGTEQAGFFVWRSNFHEAGEGETEASLQEGMDRVRDVVRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 VVDGNRQEDAYMLDIFHEVLGGTEQAGFFVWRSNFHEAGEGETEASLQEGMDRVRDVVRA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 STFSCIMQKWGGKREVMYTAFKALGDSVDYIQVCDSDTVLDPACTIEMLRVLEEDPQVGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 STFSCIMQKWGGKREVMYTAFKALGDSVDYIQVCDSDTVLDPACTIEMLRVLEEDPQVGG 190 200 210 220 230 240 250 260 270 280 pF1KE2 VGGDVQPPGKGMAVEDDQVQAAQVRATEAWSVHQRHVSREQ ::::::::::::::::::::::::::::::::::::::::: CCDS10 VGGDVQPPGKGMAVEDDQVQAAQVRATEAWSVHQRHVSREQ 250 260 270 280 >>CCDS10871.1 HAS3 gene_id:3038|Hs108|chr16 (553 aa) initn: 1634 init1: 1634 opt: 1634 Z-score: 2060.5 bits: 390.1 E(32554): 1.9e-108 Smith-Waterman score: 1634; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246) 10 20 30 40 50 60 pF1KE2 MPVQLTTALRVVGTSLFALAVLGGILAAYVTGYQFIHTEKHYLSFGLYGAILGLHLLIQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MPVQLTTALRVVGTSLFALAVLGGILAAYVTGYQFIHTEKHYLSFGLYGAILGLHLLIQS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 LFAFLEHRRMRRAGQALKLPSPRRGSVALCIAAYQEDPDYLRKCLRSAQRISFPDLKVVM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 LFAFLEHRRMRRAGQALKLPSPRRGSVALCIAAYQEDPDYLRKCLRSAQRISFPDLKVVM 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 VVDGNRQEDAYMLDIFHEVLGGTEQAGFFVWRSNFHEAGEGETEASLQEGMDRVRDVVRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 VVDGNRQEDAYMLDIFHEVLGGTEQAGFFVWRSNFHEAGEGETEASLQEGMDRVRDVVRA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 STFSCIMQKWGGKREVMYTAFKALGDSVDYIQVCDSDTVLDPACTIEMLRVLEEDPQVGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 STFSCIMQKWGGKREVMYTAFKALGDSVDYIQVCDSDTVLDPACTIEMLRVLEEDPQVGG 190 200 210 220 230 240 250 260 270 280 pF1KE2 VGGDVQPPGKGMAVEDDQVQAAQVRATEAWSVHQRHVSREQ :::::: CCDS10 VGGDVQILNKYDSWISFLSSVRYWMAFNVERACQSYFGCVQCISGPLGMYRNSLLQQFLE 250 260 270 280 290 300 >>CCDS6335.1 HAS2 gene_id:3037|Hs108|chr8 (552 aa) initn: 764 init1: 483 opt: 1041 Z-score: 1312.3 bits: 251.6 E(32554): 9e-67 Smith-Waterman score: 1041; 61.8% identity (87.0% similar) in 238 aa overlap (9-246:10-243) 10 20 30 40 50 pF1KE2 MPVQLTTALRVVGTSLFALAVLGGILAAYVTGYQFIHTEKHYLSFGLYGAILGLHLLIQ ::..::.::....: :: :::..:::::.:...:.:::::::.:. ::.:: CCDS63 MHCERFLCILRIIGTTLFGVSLLLGITAAYIVGYQFIQTDNYYFSFGLYGAFLASHLIIQ 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE2 SLFAFLEHRRMRRAGQALKLPSPRRGSVALCIAAYQEDPDYLRKCLRSAQRISFPDLKVV :::::::::.:... :. : .:::::::::::::::::::.:..:...: .::: CCDS63 SLFAFLEHRKMKKS---LETPIKLNKTVALCIAAYQEDPDYLRKCLQSVKRLTYPGIKVV 70 80 90 100 110 120 130 140 150 160 170 pF1KE2 MVVDGNRQEDAYMLDIFHEVLGGTEQAGFFVWRSNFHEAGEGETEASLQEGMDRVRDVVR ::.::: ..: ::.::: ::.: .... ..:..:::: : :::. : .:. ..: ..: CCDS63 MVIDGNSEDDLYMMDIFSEVMG-RDKSATYIWKNNFHEKGPGETDESHKESSQHVTQLVL 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE2 ASTFSCIMQKWGGKREVMYTAFKALGDSVDYIQVCDSDTVLDPACTIEMLRVLEEDPQVG .. :::::::::::::::::.::: ::::.:::::::.:::: ..::..::::::.:: CCDS63 SNKSICIMQKWGGKREVMYTAFRALGRSVDYVQVCDSDTMLDPASSVEMVKVLEEDPMVG 180 190 200 210 220 230 240 250 260 270 280 pF1KE2 GVGGDVQPPGKGMAVEDDQVQAAQVRATEAWSVHQRHVSREQ ::::::: CCDS63 GVGGDVQILNKYDSWISFLSSVRYWMAFNIERACQSYFGCVQCISGPLGMYRNSLLHEFV 240 250 260 270 280 290 >>CCDS74436.1 HAS1 gene_id:3036|Hs108|chr19 (577 aa) initn: 731 init1: 359 opt: 361 Z-score: 453.9 bits: 92.9 E(32554): 5.8e-19 Smith-Waterman score: 765; 50.8% identity (70.8% similar) in 250 aa overlap (10-246:20-267) 10 20 30 40 50 pF1KE2 MPVQLTTALRVVGTSLFALAVLGGILAAYVTGYQFIHTEKHYLSFGLYGA : : : ::: .:: . ::..: . . :.:::::: CCDS74 MRQDAPKPTPAACRCSGLARRVLTIAFALLILGLMTWAYAAGVPLASDRYGLLAFGLYGA 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE2 ILGLHLLIQSLFAFLEHRRMRRAGQALKLPSPRRGSVALCIAAYQEDPDYLRKCLRSAQR .:. ::. :::::.:::::. :... : . :::: :.:::::: :::.:: ::. CCDS74 FLSAHLVAQSLFAYLEHRRVAAAARG-PLDAATARSVALTISAYQEDPAYLRQCLASARA 70 80 90 100 110 120 130 140 150 160 pF1KE2 ISFPD--LKVVMVVDGNRQEDAYMLDIFHEVLGGTEQAGFFVWRSNFHEAGEGETEASLQ . .: :.:.::::::: :: ::.:.:.::.. . : . :: .:.:. : . ... CCDS74 LLYPRARLRVLMVVDGNRAEDLYMVDMFREVFADEDPATY-VWDGNYHQPWEPAAAGAVG 120 130 140 150 160 170 170 180 190 200 210 pF1KE2 EGMDR-----------VRDVVRASTFSCIMQKWGGKREVMYTAFKALGDSVDYIQVCDSD : : :. .::. :. :.:::::::::::::::::::::.:::::: CCDS74 AGAYREVEAEDPGRLAVEALVRTRRCVCVAQRWGGKREVMYTAFKALGDSVDYVQVCDSD 180 190 200 210 220 230 220 230 240 250 260 270 pF1KE2 TVLDPACTIEMLRVLEEDPQVGGVGGDVQPPGKGMAVEDDQVQAAQVRATEAWSVHQRHV : ::: .:..:::.:::.::.:::::. CCDS74 TRLDPMALLELVRVLDEDPRVGAVGGDVRILNPLDSWVSFLSSLRYWVAFNVERACQSYF 240 250 260 270 280 290 >>CCDS12838.1 HAS1 gene_id:3036|Hs108|chr19 (578 aa) initn: 731 init1: 359 opt: 361 Z-score: 453.9 bits: 92.9 E(32554): 5.8e-19 Smith-Waterman score: 765; 50.8% identity (70.8% similar) in 250 aa overlap (10-246:21-268) 10 20 30 40 pF1KE2 MPVQLTTALRVVGTSLFALAVLGGILAAYVTGYQFIHTEKHYLSFGLYG : : : ::: .:: . ::..: . . :.::::: CCDS12 MRQQDAPKPTPAACRCSGLARRVLTIAFALLILGLMTWAYAAGVPLASDRYGLLAFGLYG 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE2 AILGLHLLIQSLFAFLEHRRMRRAGQALKLPSPRRGSVALCIAAYQEDPDYLRKCLRSAQ :.:. ::. :::::.:::::. :... : . :::: :.:::::: :::.:: ::. CCDS12 AFLSAHLVAQSLFAYLEHRRVAAAARG-PLDAATARSVALTISAYQEDPAYLRQCLASAR 70 80 90 100 110 110 120 130 140 150 160 pF1KE2 RISFPD--LKVVMVVDGNRQEDAYMLDIFHEVLGGTEQAGFFVWRSNFHEAGEGETEASL . .: :.:.::::::: :: ::.:.:.::.. . : . :: .:.:. : . ... CCDS12 ALLYPRARLRVLMVVDGNRAEDLYMVDMFREVFADEDPATY-VWDGNYHQPWEPAAAGAV 120 130 140 150 160 170 170 180 190 200 210 pF1KE2 QEGMDR-----------VRDVVRASTFSCIMQKWGGKREVMYTAFKALGDSVDYIQVCDS : : :. .::. :. :.:::::::::::::::::::::.::::: CCDS12 GAGAYREVEAEDPGRLAVEALVRTRRCVCVAQRWGGKREVMYTAFKALGDSVDYVQVCDS 180 190 200 210 220 230 220 230 240 250 260 270 pF1KE2 DTVLDPACTIEMLRVLEEDPQVGGVGGDVQPPGKGMAVEDDQVQAAQVRATEAWSVHQRH :: ::: .:..:::.:::.::.:::::. CCDS12 DTRLDPMALLELVRVLDEDPRVGAVGGDVRILNPLDSWVSFLSSLRYWVAFNVERACQSY 240 250 260 270 280 290 281 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 03:35:10 2016 done: Tue Nov 8 03:35:10 2016 Total Scan time: 1.930 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]