Result of FASTA (omim) for
pFN21AE2526
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2526, 192 aa
1>>>pF1KE2526 192 - 192 aa - 192 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1650+/-0.000339; mu= 12.9566+/- 0.021
mean_var=54.1253+/-10.988, 0's: 0 Z-trim(114.1): 43 B-trim: 0 in 0/55
Lambda= 0.174331
statistics sampled from 23691 (23732) to 23691 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.278), width: 16
Scan time: 4.710
The best scores are: opt bits E(85289)
NP_671513 (OMIM: 601978,605726,614373) sigma non-o ( 192) 1301 335.0 4.6e-92
NP_001269134 (OMIM: 601978,605726,614373) sigma no ( 155) 808 210.9 8e-55
NP_005857 (OMIM: 601978,605726,614373) sigma non-o ( 223) 808 211.0 1.1e-54
NP_001269137 (OMIM: 601978,605726,614373) sigma no ( 159) 800 208.9 3.3e-54
NP_001269138 (OMIM: 601978,605726,614373) sigma no ( 110) 703 184.5 5.2e-47
NP_001269135 (OMIM: 601978,605726,614373) sigma no ( 123) 504 134.5 6.7e-32
NP_001269136 (OMIM: 601978,605726,614373) sigma no ( 203) 504 134.5 1.1e-31
>>NP_671513 (OMIM: 601978,605726,614373) sigma non-opioi (192 aa)
initn: 1301 init1: 1301 opt: 1301 Z-score: 1773.8 bits: 335.0 E(85289): 4.6e-92
Smith-Waterman score: 1301; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192)
10 20 30 40 50 60
pF1KE2 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_671 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_671 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGET
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 VVHGPGEATAVEWGPNTWMVEYGRGVIPSTLAFALADTVFSTQDFLTLFYTLRSYARGLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_671 VVHGPGEATAVEWGPNTWMVEYGRGVIPSTLAFALADTVFSTQDFLTLFYTLRSYARGLR
130 140 150 160 170 180
190
pF1KE2 LELTTYLFGQDP
::::::::::::
NP_671 LELTTYLFGQDP
190
>>NP_001269134 (OMIM: 601978,605726,614373) sigma non-op (155 aa)
initn: 808 init1: 808 opt: 808 Z-score: 1105.2 bits: 210.9 E(85289): 8e-55
Smith-Waterman score: 808; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)
10 20 30 40 50 60
pF1KE2 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 VVHGPGEATAVEWGPNTWMVEYGRGVIPSTLAFALADTVFSTQDFLTLFYTLRSYARGLR
NP_001 WAEISDTIISGTFHQWREGTTKSEVFYPGPLTSQA
130 140 150
>>NP_005857 (OMIM: 601978,605726,614373) sigma non-opioi (223 aa)
initn: 808 init1: 808 opt: 808 Z-score: 1102.7 bits: 211.0 E(85289): 1.1e-54
Smith-Waterman score: 1229; 86.1% identity (86.1% similar) in 223 aa overlap (1-192:1-223)
10 20 30 40 50 60
pF1KE2 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
10 20 30 40 50 60
70 80 90 100 110
pF1KE2 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSG--
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY
70 80 90 100 110 120
120 130 140
pF1KE2 -----------------------------ETVVHGPGEATAVEWGPNTWMVEYGRGVIPS
:::::::::::::::::::::::::::::::
NP_005 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS
130 140 150 160 170 180
150 160 170 180 190
pF1KE2 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP
:::::::::::::::::::::::::::::::::::::::::::
NP_005 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP
190 200 210 220
>>NP_001269137 (OMIM: 601978,605726,614373) sigma non-op (159 aa)
initn: 822 init1: 800 opt: 800 Z-score: 1094.2 bits: 208.9 E(85289): 3.3e-54
Smith-Waterman score: 800; 100.0% identity (100.0% similar) in 117 aa overlap (1-117:1-117)
10 20 30 40 50 60
pF1KE2 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGET
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSVSC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 VVHGPGEATAVEWGPNTWMVEYGRGVIPSTLAFALADTVFSTQDFLTLFYTLRSYARGLR
NP_001 AIVTQGATGLRSRIPSSLAPSTSGERAPPKVRSSTQGRR
130 140 150
>>NP_001269138 (OMIM: 601978,605726,614373) sigma non-op (110 aa)
initn: 703 init1: 703 opt: 703 Z-score: 964.9 bits: 184.5 E(85289): 5.2e-47
Smith-Waterman score: 703; 100.0% identity (100.0% similar) in 102 aa overlap (1-102:1-102)
10 20 30 40 50 60
pF1KE2 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGET
::::::::::::::::::::::::::::::::::::::::::
NP_001 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEGDGSTRAW
70 80 90 100 110
130 140 150 160 170 180
pF1KE2 VVHGPGEATAVEWGPNTWMVEYGRGVIPSTLAFALADTVFSTQDFLTLFYTLRSYARGLR
>>NP_001269135 (OMIM: 601978,605726,614373) sigma non-op (123 aa)
initn: 516 init1: 504 opt: 504 Z-score: 693.6 bits: 134.5 E(85289): 6.7e-32
Smith-Waterman score: 504; 90.6% identity (94.1% similar) in 85 aa overlap (108-192:39-123)
80 90 100 110 120 130
pF1KE2 ELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGETVVHGPGEATAVEWGPNT
::. . . ::::::::::::::::::::
NP_001 CAFCTPRCPRRYWAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNT
10 20 30 40 50 60
140 150 160 170 180 190
pF1KE2 WMVEYGRGVIPSTLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WMVEYGRGVIPSTLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP
70 80 90 100 110 120
>>NP_001269136 (OMIM: 601978,605726,614373) sigma non-op (203 aa)
initn: 711 init1: 504 opt: 504 Z-score: 690.1 bits: 134.5 E(85289): 1.1e-31
Smith-Waterman score: 1053; 77.1% identity (77.1% similar) in 223 aa overlap (1-192:1-203)
10 20 30 40 50 60
pF1KE2 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
::::::::::::::::::::::::::::::: :::::::::
NP_001 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLG--------------------LDHELAFSR
10 20 30 40
70 80 90 100 110
pF1KE2 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSG--
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY
50 60 70 80 90 100
120 130 140
pF1KE2 -----------------------------ETVVHGPGEATAVEWGPNTWMVEYGRGVIPS
:::::::::::::::::::::::::::::::
NP_001 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS
110 120 130 140 150 160
150 160 170 180 190
pF1KE2 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP
:::::::::::::::::::::::::::::::::::::::::::
NP_001 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP
170 180 190 200
192 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 03:27:19 2016 done: Tue Nov 8 03:27:20 2016
Total Scan time: 4.710 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]