FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2489, 580 aa
  1>>>pF1KE2489 580 - 580 aa - 580 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.6388+/-0.00131; mu= -19.1962+/- 0.074
 mean_var=433.2269+/-101.186, 0's: 0 Z-trim(108.4): 217  B-trim: 359 in 1/53
 Lambda= 0.061619
 statistics sampled from 9959 (10158) to 9959 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.312), width:  16
 Scan time:  3.800

The best scores are:                                      opt bits E(32554)
CCDS43071.1 ULK4 gene_id:54986|Hs108|chr3          (1275) 3688 343.5 9.3e-94


>>CCDS43071.1 ULK4 gene_id:54986|Hs108|chr3               (1275 aa)
 initn: 3685 init1: 3685 opt: 3688  Z-score: 1796.8  bits: 343.5 E(32554): 9.3e-94
Smith-Waterman score: 3688; 96.2% identity (97.9% similar) in 580 aa overlap (1-578:1-575)

               10        20        30        40        50        60
pF1KE2 MENFILYEEIGRGSKTVVYKGRRKGTINFVAILCTDKCKRPEITNWVRLTREIKHKNIVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MENFILYEEIGRGSKTVVYKGRRKGTINFVAILCTDKCKRPEITNWVRLTREIKHKNIVT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 FHEWYETSNHLWLVVELCTGGSLKTVIAQDENLPEDVVREFGIDLISGLHHLHKLGILFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FHEWYETSNHLWLVVELCTGGSLKTVIAQDENLPEDVVREFGIDLISGLHHLHKLGILFC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 DISPRKILLEGPGTLKFSNFCLAKVEGENLEEFFALVAAEEGGGDNGENVLKKSMKSRVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DISPRKILLEGPGTLKFSNFCLAKVEGENLEEFFALVAAEEGGGDNGENVLKKSMKSRVK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 GSPVYTAPEVVRGADFSISSDLWSLGCLLYEMFSGKPPFFSESISELTEKILCEDPLPPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GSPVYTAPEVVRGADFSISSDLWSLGCLLYEMFSGKPPFFSESISELTEKILCEDPLPPI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 PKDSSRPKASSDFINLLDGLLQRDPQKRLTWTRLLQHSFWKKAFAGADQESSVEDLSLSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PKDSSRPKASSDFINLLDGLLQRDPQKRLTWTRLLQHSFWKKAFAGADQESSVEDLSLSR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 NTMECSGPQDSKELLQNSQSRQAKGHKSGQPLGHSFRLENPTEFRPKSTLEGQLNESMFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NTMECSGPQDSKELLQNSQSRQAKGHKSGQPLGHSFRLENPTEFRPKSTLEGQLNESMFL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 LSSRPTPRTSTAVEVSPGEDMTHCSPQKTSPLTKITSGHLSQQDLESQMRELIYTDSDLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LSSRPTPRTSTAVEVSPGEDMTHCSPQKTSPLTKITSGHLSQQDLESQMRELIYTDSDLV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 VTPIIDNPKIMKQPPVKFDAKILHLPTYSVDKLLFLKDQDWNDFLQQVCSQIDSTEKSMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VTPIIDNPKIMKQPPVKFDAKILHLPTYSVDKLLFLKDQDWNDFLQQVCSQIDSTEKSMG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 ASRAKLNLLCYLCVVAGHQEVATRLLHSPLFQLLIQHLRIAPNWDIRAKVAHVIGLLASH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ASRAKLNLLCYLCVVAGHQEVATRLLHSPLFQLLIQHLRIAPNWDIRAKVAHVIGLLASH
              490       500       510       520       530       540

              550       560         570       580                  
pF1KE2 TAELQENTPVVETTSSIGIGILNCLVQHS--TPVPRQCLVYV                  
       ::::::::::::.     : .:. :....  .   .:::.                    
CCDS43 TAELQENTPVVEA-----IVLLTELIRENFRNSKLKQCLLPTLGELIYLVATQEEKKKNP
              550            560       570       580       590     

CCDS43 RECWAVPLAAYTVLMRCLREGEERVVNHMAAKIIENVCTTFSAQSQGFITGEIGPILWYL
         600       610       620       630       640       650     




580 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 20:56:02 2016 done: Mon Nov  7 20:56:03 2016
 Total Scan time:  3.800 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]