FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2425, 329 aa
  1>>>pF1KE2425 329 - 329 aa - 329 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5167+/-0.000664; mu= 20.8223+/- 0.040
 mean_var=65.9267+/-13.499, 0's: 0 Z-trim(110.3): 12  B-trim: 65 in 1/50
 Lambda= 0.157959
 statistics sampled from 11539 (11542) to 11539 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.355), width:  16
 Scan time:  2.060

The best scores are:                                      opt bits E(32554)
CCDS8151.1 RCE1 gene_id:9986|Hs108|chr11           ( 329) 2269 525.4 2.4e-149


>>CCDS8151.1 RCE1 gene_id:9986|Hs108|chr11                (329 aa)
 initn: 2269 init1: 2269 opt: 2269  Z-score: 2794.7  bits: 525.4 E(32554): 2.4e-149
Smith-Waterman score: 2269; 100.0% identity (100.0% similar) in 329 aa overlap (1-329:1-329)

               10        20        30        40        50        60
pF1KE2 MAALGGDGLRLLSVSRPERPPESAALGGLGPGLCCWVSVFSCLSLACSYVGSLYVWKSEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MAALGGDGLRLLSVSRPERPPESAALGGLGPGLCCWVSVFSCLSLACSYVGSLYVWKSEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 PRDHPAVIKRRFTSVLVVSSLSPLCVLLWRELTGIQPGTSLLTLMGFRLEGIFPAALLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 PRDHPAVIKRRFTSVLVVSSLSPLCVLLWRELTGIQPGTSLLTLMGFRLEGIFPAALLPL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 LLTMILFLGPLMQLSMDCPCDLADGLKVVLAPRSWARCLTDMRWLRNQVIAPLTEELVFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LLTMILFLGPLMQLSMDCPCDLADGLKVVLAPRSWARCLTDMRWLRNQVIAPLTEELVFR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 ACMLPMLAPCMGLGPAVFTCPLFFGVAHFHHIIEQLRFRQSSVGNIFLSAAFQFSYTAVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ACMLPMLAPCMGLGPAVFTCPLFFGVAHFHHIIEQLRFRQSSVGNIFLSAAFQFSYTAVF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 GAYTAFLFIRTGHLIGPVLCHSFCNYMGFPAVCAALEHPQRRPLLAGYALGVGLFLLLLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 GAYTAFLFIRTGHLIGPVLCHSFCNYMGFPAVCAALEHPQRRPLLAGYALGVGLFLLLLQ
              250       260       270       280       290       300

              310       320         
pF1KE2 PLTDPKLYGSLPLCVLLERAGDSEAPLCS
       :::::::::::::::::::::::::::::
CCDS81 PLTDPKLYGSLPLCVLLERAGDSEAPLCS
              310       320         




329 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 19:53:07 2016 done: Mon Nov  7 19:53:07 2016
 Total Scan time:  2.060 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]