FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2417, 447 aa
  1>>>pF1KE2417 447 - 447 aa - 447 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.7241+/-0.000409; mu= -5.7745+/- 0.025
 mean_var=379.3520+/-80.610, 0's: 0 Z-trim(122.7): 46  B-trim: 1852 in 2/57
 Lambda= 0.065850
 statistics sampled from 41313 (41375) to 41313 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.485), width:  16
 Scan time:  8.830

The best scores are:                                      opt bits E(85289)
NP_057603 (OMIM: 601259,616270) ameloblastin precu ( 447) 3106 308.9 1.8e-83


>>NP_057603 (OMIM: 601259,616270) ameloblastin precursor  (447 aa)
 initn: 3106 init1: 3106 opt: 3106  Z-score: 1619.7  bits: 308.9 E(85289): 1.8e-83
Smith-Waterman score: 3106; 99.8% identity (99.8% similar) in 447 aa overlap (1-447:1-447)

               10        20        30        40        50        60
pF1KE2 MSASKIPLFKMKDLILILCLLEMSFAVPFFPQQSGTPGMASLSLETMRQLGSLQRLNTLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MSASKIPLFKMKDLILILCLLEMSFAVPFFPQQSGTPGMASLSLETMRQLGSLQRLNTLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 QYSRYGFGKSFNSLWMHGLLPPHSSLPWMRPREHETQQYEYSLPVHPPPLPSQPSLKPQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 QYSRYGFGKSFNSLWMHGLLPPHSSLPWMRPREHETQQYEYSLPVHPPPLPSQPSLKPQQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 PGLKPFLQSAAATTNQATALKEALQPPIHLGHLPLQEGELPLVQQQVAPSDKPPKPELPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 PGLKPFLQSAAATTNQATALKEALQPPIHLGHLPLQEGELPLVQQQVAPSDKPPKPELPG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 VDFADPQGPSLPGMDFPDPQGPSLPGLDFADPQGSTIFQIARLISHGPMPQNKQSPLYPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 VDFADPQGPSLPGMDFPDPQGPSLPGLDFADPQGSTIFQIARLISHGPMPQNKQSPLYPG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 MLYVPFGANQLNAPARLGIMSSEEVAGGREDPMAYGAMFPGFGGMRPGFEGMPHNPAMGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MLYVPFGANQLNAPARLGIMSSEEVAGGREDPMAYGAMFPGFGGMRPGFEGMPHNPAMGG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 DFTLEFDSPVAATKGPENEEGGAQGSPMPEANPDNLENPAFLTELEPAPHAGLPALPKDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
NP_057 DFTLEFDSPVAATKGPENEEGGAQGSPMPEANPDNLENPAFLTELEPAPHAGLLALPKDD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 IPGLPRSPSGKMKGLPSVTPAAADPLMTPELADVYRTYDADMTTSVDFQEEATMDTTMAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 IPGLPRSPSGKMKGLPSVTPAAADPLMTPELADVYRTYDADMTTSVDFQEEATMDTTMAP
              370       380       390       400       410       420

              430       440       
pF1KE2 NSLQTSMPGNKAQEPEMMHDAWHFQEP
       :::::::::::::::::::::::::::
NP_057 NSLQTSMPGNKAQEPEMMHDAWHFQEP
              430       440       




447 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 19:33:44 2016 done: Mon Nov  7 19:33:45 2016
 Total Scan time:  8.830 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]