FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2417, 447 aa
  1>>>pF1KE2417 447 - 447 aa - 447 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.9821+/-0.000959; mu= -1.5861+/- 0.058
 mean_var=317.6767+/-64.867, 0's: 0 Z-trim(114.9): 44  B-trim: 163 in 1/53
 Lambda= 0.071958
 statistics sampled from 15452 (15489) to 15452 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.476), width:  16
 Scan time:  3.000

The best scores are:                                      opt bits E(32554)
CCDS3543.1 AMBN gene_id:258|Hs108|chr4             ( 447) 3106 335.8 5.3e-92


>>CCDS3543.1 AMBN gene_id:258|Hs108|chr4                  (447 aa)
 initn: 3106 init1: 3106 opt: 3106  Z-score: 1765.1  bits: 335.8 E(32554): 5.3e-92
Smith-Waterman score: 3106; 99.8% identity (99.8% similar) in 447 aa overlap (1-447:1-447)

               10        20        30        40        50        60
pF1KE2 MSASKIPLFKMKDLILILCLLEMSFAVPFFPQQSGTPGMASLSLETMRQLGSLQRLNTLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MSASKIPLFKMKDLILILCLLEMSFAVPFFPQQSGTPGMASLSLETMRQLGSLQRLNTLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 QYSRYGFGKSFNSLWMHGLLPPHSSLPWMRPREHETQQYEYSLPVHPPPLPSQPSLKPQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 QYSRYGFGKSFNSLWMHGLLPPHSSLPWMRPREHETQQYEYSLPVHPPPLPSQPSLKPQQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 PGLKPFLQSAAATTNQATALKEALQPPIHLGHLPLQEGELPLVQQQVAPSDKPPKPELPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PGLKPFLQSAAATTNQATALKEALQPPIHLGHLPLQEGELPLVQQQVAPSDKPPKPELPG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 VDFADPQGPSLPGMDFPDPQGPSLPGLDFADPQGSTIFQIARLISHGPMPQNKQSPLYPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 VDFADPQGPSLPGMDFPDPQGPSLPGLDFADPQGSTIFQIARLISHGPMPQNKQSPLYPG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 MLYVPFGANQLNAPARLGIMSSEEVAGGREDPMAYGAMFPGFGGMRPGFEGMPHNPAMGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MLYVPFGANQLNAPARLGIMSSEEVAGGREDPMAYGAMFPGFGGMRPGFEGMPHNPAMGG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 DFTLEFDSPVAATKGPENEEGGAQGSPMPEANPDNLENPAFLTELEPAPHAGLPALPKDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
CCDS35 DFTLEFDSPVAATKGPENEEGGAQGSPMPEANPDNLENPAFLTELEPAPHAGLLALPKDD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 IPGLPRSPSGKMKGLPSVTPAAADPLMTPELADVYRTYDADMTTSVDFQEEATMDTTMAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 IPGLPRSPSGKMKGLPSVTPAAADPLMTPELADVYRTYDADMTTSVDFQEEATMDTTMAP
              370       380       390       400       410       420

              430       440       
pF1KE2 NSLQTSMPGNKAQEPEMMHDAWHFQEP
       :::::::::::::::::::::::::::
CCDS35 NSLQTSMPGNKAQEPEMMHDAWHFQEP
              430       440       




447 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 19:33:43 2016 done: Mon Nov  7 19:33:43 2016
 Total Scan time:  3.000 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]