FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2409, 221 aa
  1>>>pF1KE2409 221 - 221 aa - 221 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2705+/-0.000643; mu= 10.0338+/- 0.039
 mean_var=84.7968+/-16.746, 0's: 0 Z-trim(113.0): 7  B-trim: 0 in 0/51
 Lambda= 0.139279
 statistics sampled from 13654 (13660) to 13654 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.777), E-opt: 0.2 (0.42), width:  16
 Scan time:  2.400

The best scores are:                                      opt bits E(32554)
CCDS4273.1 NDFIP1 gene_id:80762|Hs108|chr5         ( 221) 1506 311.5 2.8e-85
CCDS31998.1 NDFIP2 gene_id:54602|Hs108|chr13       ( 336)  822 174.1 9.5e-44


>>CCDS4273.1 NDFIP1 gene_id:80762|Hs108|chr5              (221 aa)
 initn: 1506 init1: 1506 opt: 1506  Z-score: 1644.6  bits: 311.5 E(32554): 2.8e-85
Smith-Waterman score: 1506; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)

               10        20        30        40        50        60
pF1KE2 MALALAALAAVEPACGSRYQQLQNEEESGEPEQAAGDAPPPYSSISAESAAYFDYKDESG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MALALAALAAVEPACGSRYQQLQNEEESGEPEQAAGDAPPPYSSISAESAAYFDYKDESG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 FPKPPSYNVATTLPSYDEAERTKAEATIPLVPGRDEDFVGRDDFDDADQLRIGNDGIFML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FPKPPSYNVATTLPSYDEAERTKAEATIPLVPGRDEDFVGRDDFDDADQLRIGNDGIFML
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 TFFMAFLFNWIGFFLSFCLTTSAAGRYGAISGFGLSLIKWILIVRFSTYFPGYFDGQYWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TFFMAFLFNWIGFFLSFCLTTSAAGRYGAISGFGLSLIKWILIVRFSTYFPGYFDGQYWL
              130       140       150       160       170       180

              190       200       210       220 
pF1KE2 WWVFLVLGFLLFLRGFINYAKVRKMPETFSNLPRTRVLFIY
       :::::::::::::::::::::::::::::::::::::::::
CCDS42 WWVFLVLGFLLFLRGFINYAKVRKMPETFSNLPRTRVLFIY
              190       200       210       220 

>>CCDS31998.1 NDFIP2 gene_id:54602|Hs108|chr13            (336 aa)
 initn: 922 init1: 669 opt: 822  Z-score: 898.9  bits: 174.1 E(32554): 9.5e-44
Smith-Waterman score: 826; 55.9% identity (73.1% similar) in 238 aa overlap (12-220:99-335)

                                  10        20        30           
pF1KE2                    MALALAALAAVEPACGSRYQQLQNEEESGE-----------
                                     .:. : ::: : :::...:           
CCDS31 SSTGVAVGAEHGEDSLSRKPDPEPGRMDHHQPGTG-RYQVLLNEEDNSESSAIEQPPTSN
       70        80        90       100        110       120       

                           40        50        60         70       
pF1KE2 --PE--QAAGDAP--------PPYSSISAESAAYFDYKDESGF-PKPPSYNVATTLPSYD
         :.  :::..::        ::::::..:  .  : .  . : : :: :.:::.::.::
CCDS31 PAPQIVQAASSAPALETDSSPPPYSSITVEVPTTSDTEVYGEFYPVPPPYSVATSLPTYD
       130       140       150       160       170       180       

        80        90            100       110       120       130  
pF1KE2 EAERTKAEATIPLVPG-----RDEDFVGRDDFDDADQLRIGNDGIFMLTFFMAFLFNWIG
       :::..:: :    .       ..:.   ::::.::::::.::::::::.:::::.:::.:
CCDS31 EAEKAKAAAMAAAAAETSQRIQEEECPPRDDFSDADQLRVGNDGIFMLAFFMAFIFNWLG
       190       200       210       220       230       240       

            140       150       160       170       180       190  
pF1KE2 FFLSFCLTTSAAGRYGAISGFGLSLIKWILIVRFSTYFPGYFDGQYWLWWVFLVLGFLLF
       : ::::.:.. ::::::: :::::::::::::::: :: :::.:::::::.:::::.:::
CCDS31 FCLSFCITNTIAGRYGAICGFGLSLIKWILIVRFSDYFTGYFNGQYWLWWIFLVLGLLLF
       250       260       270       280       290       300       

            200       210       220 
pF1KE2 LRGFINYAKVRKMPETFSNLPRTRVLFIY
       .:::.:: :::.: :...   ::: .:. 
CCDS31 FRGFVNYLKVRNMSESMAAAHRTRYFFLL
       310       320       330      




221 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:48:16 2016 done: Sat Nov  5 20:48:16 2016
 Total Scan time:  2.400 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]