Result of FASTA (omim) for
pFN21AE2403
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2403, 212 aa
1>>>pF1KE2403 212 - 212 aa - 212 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1859+/-0.000377; mu= 13.6726+/- 0.023
mean_var=57.2324+/-11.694, 0's: 0 Z-trim(112.1): 38 B-trim: 917 in 1/51
Lambda= 0.169533
statistics sampled from 20846 (20871) to 20846 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.245), width: 16
Scan time: 6.010
The best scores are: opt bits E(85289)
NP_001159812 (OMIM: 608659) sentrin-specific prote ( 212) 1423 356.2 2.2e-98
NP_001165582 (OMIM: 608659) sentrin-specific prote ( 212) 1423 356.2 2.2e-98
NP_001165581 (OMIM: 608659) sentrin-specific prote ( 212) 1423 356.2 2.2e-98
XP_011519519 (OMIM: 608659) PREDICTED: sentrin-spe ( 212) 1423 356.2 2.2e-98
NP_001165580 (OMIM: 608659) sentrin-specific prote ( 212) 1423 356.2 2.2e-98
NP_660205 (OMIM: 608659) sentrin-specific protease ( 212) 1423 356.2 2.2e-98
XP_005254214 (OMIM: 608659) PREDICTED: sentrin-spe ( 212) 1423 356.2 2.2e-98
XP_011519517 (OMIM: 608659) PREDICTED: sentrin-spe ( 256) 1423 356.3 2.6e-98
>>NP_001159812 (OMIM: 608659) sentrin-specific protease (212 aa)
initn: 1423 init1: 1423 opt: 1423 Z-score: 1887.2 bits: 356.2 E(85289): 2.2e-98
Smith-Waterman score: 1423; 99.5% identity (100.0% similar) in 212 aa overlap (1-212:1-212)
10 20 30 40 50 60
pF1KE2 MDPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHVSFISPEVTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHVSFISPEVTQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 FIKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGTHWSLLVYLQDKNSFFHYDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FIKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGTHWSLLVYLQDKNSFFHYDS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 HSRSNSVHAKQVAEKLEAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HSRSNSVHAKQVAEKLEAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFR
130 140 150 160 170 180
190 200 210
pF1KE2 QQTESLLQLLTPAYITKKRGEWKDLIATLAKK
::::::::::::::::::::::::::.:::::
NP_001 QQTESLLQLLTPAYITKKRGEWKDLITTLAKK
190 200 210
>>NP_001165582 (OMIM: 608659) sentrin-specific protease (212 aa)
initn: 1423 init1: 1423 opt: 1423 Z-score: 1887.2 bits: 356.2 E(85289): 2.2e-98
Smith-Waterman score: 1423; 99.5% identity (100.0% similar) in 212 aa overlap (1-212:1-212)
10 20 30 40 50 60
pF1KE2 MDPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHVSFISPEVTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHVSFISPEVTQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 FIKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGTHWSLLVYLQDKNSFFHYDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FIKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGTHWSLLVYLQDKNSFFHYDS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 HSRSNSVHAKQVAEKLEAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HSRSNSVHAKQVAEKLEAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFR
130 140 150 160 170 180
190 200 210
pF1KE2 QQTESLLQLLTPAYITKKRGEWKDLIATLAKK
::::::::::::::::::::::::::.:::::
NP_001 QQTESLLQLLTPAYITKKRGEWKDLITTLAKK
190 200 210
>>NP_001165581 (OMIM: 608659) sentrin-specific protease (212 aa)
initn: 1423 init1: 1423 opt: 1423 Z-score: 1887.2 bits: 356.2 E(85289): 2.2e-98
Smith-Waterman score: 1423; 99.5% identity (100.0% similar) in 212 aa overlap (1-212:1-212)
10 20 30 40 50 60
pF1KE2 MDPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHVSFISPEVTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHVSFISPEVTQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 FIKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGTHWSLLVYLQDKNSFFHYDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FIKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGTHWSLLVYLQDKNSFFHYDS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 HSRSNSVHAKQVAEKLEAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HSRSNSVHAKQVAEKLEAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFR
130 140 150 160 170 180
190 200 210
pF1KE2 QQTESLLQLLTPAYITKKRGEWKDLIATLAKK
::::::::::::::::::::::::::.:::::
NP_001 QQTESLLQLLTPAYITKKRGEWKDLITTLAKK
190 200 210
>>XP_011519519 (OMIM: 608659) PREDICTED: sentrin-specifi (212 aa)
initn: 1423 init1: 1423 opt: 1423 Z-score: 1887.2 bits: 356.2 E(85289): 2.2e-98
Smith-Waterman score: 1423; 99.5% identity (100.0% similar) in 212 aa overlap (1-212:1-212)
10 20 30 40 50 60
pF1KE2 MDPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHVSFISPEVTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHVSFISPEVTQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 FIKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGTHWSLLVYLQDKNSFFHYDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FIKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGTHWSLLVYLQDKNSFFHYDS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 HSRSNSVHAKQVAEKLEAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HSRSNSVHAKQVAEKLEAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFR
130 140 150 160 170 180
190 200 210
pF1KE2 QQTESLLQLLTPAYITKKRGEWKDLIATLAKK
::::::::::::::::::::::::::.:::::
XP_011 QQTESLLQLLTPAYITKKRGEWKDLITTLAKK
190 200 210
>>NP_001165580 (OMIM: 608659) sentrin-specific protease (212 aa)
initn: 1423 init1: 1423 opt: 1423 Z-score: 1887.2 bits: 356.2 E(85289): 2.2e-98
Smith-Waterman score: 1423; 99.5% identity (100.0% similar) in 212 aa overlap (1-212:1-212)
10 20 30 40 50 60
pF1KE2 MDPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHVSFISPEVTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHVSFISPEVTQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 FIKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGTHWSLLVYLQDKNSFFHYDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FIKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGTHWSLLVYLQDKNSFFHYDS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 HSRSNSVHAKQVAEKLEAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HSRSNSVHAKQVAEKLEAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFR
130 140 150 160 170 180
190 200 210
pF1KE2 QQTESLLQLLTPAYITKKRGEWKDLIATLAKK
::::::::::::::::::::::::::.:::::
NP_001 QQTESLLQLLTPAYITKKRGEWKDLITTLAKK
190 200 210
>>NP_660205 (OMIM: 608659) sentrin-specific protease 8 [ (212 aa)
initn: 1423 init1: 1423 opt: 1423 Z-score: 1887.2 bits: 356.2 E(85289): 2.2e-98
Smith-Waterman score: 1423; 99.5% identity (100.0% similar) in 212 aa overlap (1-212:1-212)
10 20 30 40 50 60
pF1KE2 MDPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHVSFISPEVTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 MDPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHVSFISPEVTQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 FIKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGTHWSLLVYLQDKNSFFHYDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 FIKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGTHWSLLVYLQDKNSFFHYDS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 HSRSNSVHAKQVAEKLEAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 HSRSNSVHAKQVAEKLEAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFR
130 140 150 160 170 180
190 200 210
pF1KE2 QQTESLLQLLTPAYITKKRGEWKDLIATLAKK
::::::::::::::::::::::::::.:::::
NP_660 QQTESLLQLLTPAYITKKRGEWKDLITTLAKK
190 200 210
>>XP_005254214 (OMIM: 608659) PREDICTED: sentrin-specifi (212 aa)
initn: 1423 init1: 1423 opt: 1423 Z-score: 1887.2 bits: 356.2 E(85289): 2.2e-98
Smith-Waterman score: 1423; 99.5% identity (100.0% similar) in 212 aa overlap (1-212:1-212)
10 20 30 40 50 60
pF1KE2 MDPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHVSFISPEVTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MDPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHVSFISPEVTQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 FIKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGTHWSLLVYLQDKNSFFHYDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FIKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGTHWSLLVYLQDKNSFFHYDS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 HSRSNSVHAKQVAEKLEAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HSRSNSVHAKQVAEKLEAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFR
130 140 150 160 170 180
190 200 210
pF1KE2 QQTESLLQLLTPAYITKKRGEWKDLIATLAKK
::::::::::::::::::::::::::.:::::
XP_005 QQTESLLQLLTPAYITKKRGEWKDLITTLAKK
190 200 210
>>XP_011519517 (OMIM: 608659) PREDICTED: sentrin-specifi (256 aa)
initn: 1423 init1: 1423 opt: 1423 Z-score: 1885.9 bits: 356.3 E(85289): 2.6e-98
Smith-Waterman score: 1423; 99.5% identity (100.0% similar) in 212 aa overlap (1-212:45-256)
10 20 30
pF1KE2 MDPVVLSYMDSLLRQSDVSLLDPPSWLNDH
::::::::::::::::::::::::::::::
XP_011 SCCLRGGRGKRKSMSLVQLLEFLSSPRQYKMDPVVLSYMDSLLRQSDVSLLDPPSWLNDH
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE2 IIGFAFEYFANSQFHDCSDHVSFISPEVTQFIKCTSNPAEIAMFLEPLDLPNKRVVFLAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IIGFAFEYFANSQFHDCSDHVSFISPEVTQFIKCTSNPAEIAMFLEPLDLPNKRVVFLAI
80 90 100 110 120 130
100 110 120 130 140 150
pF1KE2 NDNSNQAAGGTHWSLLVYLQDKNSFFHYDSHSRSNSVHAKQVAEKLEAFLGRKGDKLAFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NDNSNQAAGGTHWSLLVYLQDKNSFFHYDSHSRSNSVHAKQVAEKLEAFLGRKGDKLAFV
140 150 160 170 180 190
160 170 180 190 200 210
pF1KE2 EEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTESLLQLLTPAYITKKRGEWKDLIATLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
XP_011 EEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTESLLQLLTPAYITKKRGEWKDLITTLA
200 210 220 230 240 250
pF1KE2 KK
::
XP_011 KK
212 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 09:19:26 2016 done: Sun Nov 6 09:19:27 2016
Total Scan time: 6.010 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]