Result of FASTA (omim) for
pFN21AE2386
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2386, 133 aa
1>>>pF1KE2386 133 - 133 aa - 133 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6252+/-0.000413; mu= 8.2684+/- 0.026
mean_var=54.9708+/-11.208, 0's: 0 Z-trim(109.8): 34 B-trim: 639 in 1/50
Lambda= 0.172985
statistics sampled from 17976 (18007) to 17976 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.592), E-opt: 0.2 (0.211), width: 16
Scan time: 4.160
The best scores are: opt bits E(85289)
NP_004093 (OMIM: 134651) fatty acid-binding protei ( 133) 848 219.9 9.7e-58
XP_011539309 (OMIM: 134651) PREDICTED: fatty acid- ( 126) 739 192.7 1.4e-49
NP_001307925 (OMIM: 134651) fatty acid-binding pro ( 144) 685 179.2 1.8e-45
NP_001437 (OMIM: 602965) fatty acid-binding protei ( 132) 599 157.7 4.9e-39
NP_001433 (OMIM: 600434) fatty acid-binding protei ( 132) 563 148.8 2.5e-36
NP_002668 (OMIM: 170715) myelin P2 protein [Homo s ( 132) 559 147.8 4.9e-36
NP_001305968 (OMIM: 602965) fatty acid-binding pro ( 166) 549 145.3 3.5e-35
NP_001305971 (OMIM: 602965) fatty acid-binding pro ( 128) 482 128.5 2.9e-30
NP_001435 (OMIM: 605168) fatty acid-binding protei ( 135) 438 117.6 6.2e-27
NP_001305970 (OMIM: 602965) fatty acid-binding pro ( 97) 378 102.6 1.5e-22
NP_001869 (OMIM: 180231) cellular retinoic acid-bi ( 138) 335 91.9 3.5e-19
NP_001186652 (OMIM: 180231) cellular retinoic acid ( 138) 335 91.9 3.5e-19
XP_016855832 (OMIM: 180231) PREDICTED: cellular re ( 138) 335 91.9 3.5e-19
NP_004155 (OMIM: 180280) retinol-binding protein 2 ( 134) 330 90.6 8e-19
NP_004369 (OMIM: 180230) cellular retinoic acid-bi ( 137) 325 89.4 1.9e-18
NP_443192 (OMIM: 608604) retinoid-binding protein ( 134) 319 87.9 5.4e-18
NP_113679 (OMIM: 611866) retinol-binding protein 5 ( 135) 270 75.6 2.6e-14
NP_002890 (OMIM: 180260) retinol-binding protein 1 ( 197) 272 76.2 2.7e-14
NP_000125 (OMIM: 134640) fatty acid-binding protei ( 132) 269 75.4 3e-14
NP_001124465 (OMIM: 180260) retinol-binding protei ( 153) 222 63.7 1.2e-10
NP_001124464 (OMIM: 180260) retinol-binding protei ( 157) 220 63.2 1.7e-10
XP_016875491 (OMIM: 611866) PREDICTED: retinol-bin ( 126) 209 60.4 9.3e-10
NP_001316383 (OMIM: 611866) retinol-binding protei ( 86) 155 46.9 7.3e-06
NP_001436 (OMIM: 600422) gastrotropin isoform 2 [H ( 128) 155 46.9 1.1e-05
NP_001124430 (OMIM: 600422) gastrotropin isoform 1 ( 177) 155 47.0 1.5e-05
NP_001035532 (OMIM: 600422) gastrotropin isoform 1 ( 177) 155 47.0 1.5e-05
NP_001434 (OMIM: 134650) fatty acid-binding protei ( 127) 132 41.2 0.00057
>>NP_004093 (OMIM: 134651) fatty acid-binding protein, h (133 aa)
initn: 848 init1: 848 opt: 848 Z-score: 1157.6 bits: 219.9 E(85289): 9.7e-58
Smith-Waterman score: 848; 100.0% identity (100.0% similar) in 133 aa overlap (1-133:1-133)
10 20 30 40 50 60
pF1KE2 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH
70 80 90 100 110 120
130
pF1KE2 GTAVCTRTYEKEA
:::::::::::::
NP_004 GTAVCTRTYEKEA
130
>>XP_011539309 (OMIM: 134651) PREDICTED: fatty acid-bind (126 aa)
initn: 739 init1: 739 opt: 739 Z-score: 1011.0 bits: 192.7 E(85289): 1.4e-49
Smith-Waterman score: 739; 100.0% identity (100.0% similar) in 116 aa overlap (1-116:1-116)
10 20 30 40 50 60
pF1KE2 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILMEKL
70 80 90 100 110 120
130
pF1KE2 GTAVCTRTYEKEA
XP_011 QLRNVK
>>NP_001307925 (OMIM: 134651) fatty acid-binding protein (144 aa)
initn: 834 init1: 685 opt: 685 Z-score: 937.2 bits: 179.2 E(85289): 1.8e-45
Smith-Waterman score: 816; 92.4% identity (92.4% similar) in 144 aa overlap (1-133:1-144)
10 20 30 40
pF1KE2 MVDAFLGTWKLVDSKNFDDYMKSL-----------GVGFATRQVASMTKPTTIIEKNGDI
:::::::::::::::::::::::: :::::::::::::::::::::::::
NP_001 MVDAFLGTWKLVDSKNFDDYMKSLAHILITFPLPSGVGFATRQVASMTKPTTIIEKNGDI
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE2 LTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVREL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVREL
70 80 90 100 110 120
110 120 130
pF1KE2 IDGKLILTLTHGTAVCTRTYEKEA
::::::::::::::::::::::::
NP_001 IDGKLILTLTHGTAVCTRTYEKEA
130 140
>>NP_001437 (OMIM: 602965) fatty acid-binding protein, b (132 aa)
initn: 599 init1: 599 opt: 599 Z-score: 821.8 bits: 157.7 E(85289): 4.9e-39
Smith-Waterman score: 599; 67.2% identity (90.8% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KE2 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN
::.:: .::::..:.:::.:::.::::::::::...::::.:: ..:: ....: :::::
NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH
:::::.:: ::::::::::. ::.:.::: ::::.:::::.::..:::. :::...:::
NP_001 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF
70 80 90 100 110 120
130
pF1KE2 GTAVCTRTYEKEA
: .: .: :::
NP_001 GDVVAVRHYEKA
130
>>NP_001433 (OMIM: 600434) fatty acid-binding protein, a (132 aa)
initn: 557 init1: 557 opt: 563 Z-score: 773.3 bits: 148.8 E(85289): 2.5e-36
Smith-Waterman score: 563; 64.9% identity (84.7% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KE2 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN
: :::.::::::.:.::::::: .:::::::.::.:.::. :: :::..:.:..:::::
NP_001 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH
::::: :: ::::.::::::::: .::::: :::.:::::. ::. :. : ::.. .
NP_001 TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM
70 80 90 100 110 120
130
pF1KE2 GTAVCTRTYEKEA
.. ::.::.
NP_001 KGVTSTRVYERA
130
>>NP_002668 (OMIM: 170715) myelin P2 protein [Homo sapie (132 aa)
initn: 559 init1: 559 opt: 559 Z-score: 767.9 bits: 147.8 E(85289): 4.9e-36
Smith-Waterman score: 559; 63.4% identity (88.5% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KE2 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN
: . ::::::::.:.:::::::.::::.:::......:::.:: :.:::.:..:.:::::
NP_002 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH
:::::::: ::.:::::.::.::::::. :.: ..:.:::.:::. :.:..::..
NP_002 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
70 80 90 100 110 120
130
pF1KE2 GTAVCTRTYEKEA
.:::: :::
NP_002 KGVVCTRIYEKV
130
>>NP_001305968 (OMIM: 602965) fatty acid-binding protein (166 aa)
initn: 549 init1: 549 opt: 549 Z-score: 752.7 bits: 145.3 E(85289): 3.5e-35
Smith-Waterman score: 549; 68.1% identity (93.1% similar) in 116 aa overlap (1-116:1-116)
10 20 30 40 50 60
pF1KE2 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN
::.:: .::::..:.:::.:::.::::::::::...::::.:: ..:: ....: :::::
NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH
:::::.:: ::::::::::. ::.:.::: ::::.:::::.::..:::. :::...
NP_001 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMVSND
70 80 90 100 110 120
130
pF1KE2 GTAVCTRTYEKEA
NP_001 NSPFFLVFFSSPHTSHLLPSSSLLLPFFLLPSFFNNTSLARFFNYM
130 140 150 160
>>NP_001305971 (OMIM: 602965) fatty acid-binding protein (128 aa)
initn: 482 init1: 482 opt: 482 Z-score: 664.3 bits: 128.5 E(85289): 2.9e-30
Smith-Waterman score: 482; 67.3% identity (89.7% similar) in 107 aa overlap (25-131:21-127)
10 20 30 40 50 60
pF1KE2 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN
:::::::::...::::.:: ..:: ....: :::::
NP_001 MQLKEKDWRSALIKTANQQKGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
10 20 30 40 50
70 80 90 100 110 120
pF1KE2 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH
:::::.:: ::::::::::. ::.:.::: ::::.:::::.::..:::. :::...:::
NP_001 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF
60 70 80 90 100 110
130
pF1KE2 GTAVCTRTYEKEA
: .: .: :::
NP_001 GDVVAVRHYEKA
120
>>NP_001435 (OMIM: 605168) fatty acid-binding protein, e (135 aa)
initn: 438 init1: 438 opt: 438 Z-score: 604.5 bits: 117.6 E(85289): 6.2e-27
Smith-Waterman score: 438; 50.0% identity (80.8% similar) in 130 aa overlap (2-131:4-133)
10 20 30 40 50
pF1KE2 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTF
:. . : :.:::::.::.::: ::::.: :....:.:: :: .: ::.::.::.
NP_001 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE2 KNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTL
:.:..: :: .:.::::: ::.... .. : ::. :.:::.:.:..:.: ::::..
NP_001 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC
70 80 90 100 110 120
120 130
pF1KE2 THGTAVCTRTYEKEA
. ....::: :::
NP_001 VMNNVTCTRIYEKVE
130
>>NP_001305970 (OMIM: 602965) fatty acid-binding protein (97 aa)
initn: 387 init1: 378 opt: 378 Z-score: 526.1 bits: 102.6 E(85289): 1.5e-22
Smith-Waterman score: 378; 69.5% identity (92.7% similar) in 82 aa overlap (1-82:1-82)
10 20 30 40 50 60
pF1KE2 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN
::.:: .::::..:.:::.:::.::::::::::...::::.:: ..:: ....: :::::
NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH
:::::.:: ::::::::::. :
NP_001 TEISFQLGEEFDETTADDRNCKVRNCFFFRVGMGRGE
70 80 90
133 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 23:14:42 2016 done: Sun Nov 6 23:14:43 2016
Total Scan time: 4.160 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]