Result of FASTA (omim) for
pFN21AE2362
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2362, 275 aa
1>>>pF1KE2362 275 - 275 aa - 275 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2875+/-0.000384; mu= 15.8053+/- 0.024
mean_var=72.0209+/-14.744, 0's: 0 Z-trim(113.2): 10 B-trim: 308 in 1/52
Lambda= 0.151128
statistics sampled from 22419 (22429) to 22419 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.643), E-opt: 0.2 (0.263), width: 16
Scan time: 6.380
The best scores are: opt bits E(85289)
NP_001273035 (OMIM: 604261) autophagy protein 5 is ( 275) 1913 426.1 3.4e-119
NP_004840 (OMIM: 604261) autophagy protein 5 isofo ( 275) 1913 426.1 3.4e-119
NP_001273036 (OMIM: 604261) autophagy protein 5 is ( 197) 1367 307.0 1.8e-83
NP_001273037 (OMIM: 604261) autophagy protein 5 is ( 213) 1117 252.5 4.8e-67
NP_001273040 (OMIM: 604261) autophagy protein 5 is ( 91) 256 64.5 8e-11
>>NP_001273035 (OMIM: 604261) autophagy protein 5 isofor (275 aa)
initn: 1913 init1: 1913 opt: 1913 Z-score: 2261.0 bits: 426.1 E(85289): 3.4e-119
Smith-Waterman score: 1913; 100.0% identity (100.0% similar) in 275 aa overlap (1-275:1-275)
10 20 30 40 50 60
pF1KE2 MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 RQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 IEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAINRKLMEYPAEEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAINRKLMEYPAEEN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEKKNQVMI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEKKNQVMI
190 200 210 220 230 240
250 260 270
pF1KE2 HGIEPMLETPLQWLSEHLSYPDNFLHISIIPQPTD
:::::::::::::::::::::::::::::::::::
NP_001 HGIEPMLETPLQWLSEHLSYPDNFLHISIIPQPTD
250 260 270
>>NP_004840 (OMIM: 604261) autophagy protein 5 isoform a (275 aa)
initn: 1913 init1: 1913 opt: 1913 Z-score: 2261.0 bits: 426.1 E(85289): 3.4e-119
Smith-Waterman score: 1913; 100.0% identity (100.0% similar) in 275 aa overlap (1-275:1-275)
10 20 30 40 50 60
pF1KE2 MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 RQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 IEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAINRKLMEYPAEEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 IEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAINRKLMEYPAEEN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEKKNQVMI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 GFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEKKNQVMI
190 200 210 220 230 240
250 260 270
pF1KE2 HGIEPMLETPLQWLSEHLSYPDNFLHISIIPQPTD
:::::::::::::::::::::::::::::::::::
NP_004 HGIEPMLETPLQWLSEHLSYPDNFLHISIIPQPTD
250 260 270
>>NP_001273036 (OMIM: 604261) autophagy protein 5 isofor (197 aa)
initn: 1367 init1: 1367 opt: 1367 Z-score: 1619.7 bits: 307.0 E(85289): 1.8e-83
Smith-Waterman score: 1367; 100.0% identity (100.0% similar) in 196 aa overlap (80-275:2-197)
50 60 70 80 90 100
pF1KE2 DKVKKHFQKVMRQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPE
::::::::::::::::::::::::::::::
NP_001 MHYPIGLLFDLLASSSALPWNITVHFKSFPE
10 20 30
110 120 130 140 150 160
pF1KE2 KDLLHCPSKDAIEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KDLLHCPSKDAIEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAIN
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE2 RKLMEYPAEENGFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKLMEYPAEENGFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDP
100 110 120 130 140 150
230 240 250 260 270
pF1KE2 EDGEKKNQVMIHGIEPMLETPLQWLSEHLSYPDNFLHISIIPQPTD
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDGEKKNQVMIHGIEPMLETPLQWLSEHLSYPDNFLHISIIPQPTD
160 170 180 190
>>NP_001273037 (OMIM: 604261) autophagy protein 5 isofor (213 aa)
initn: 1111 init1: 1111 opt: 1117 Z-score: 1324.6 bits: 252.5 E(85289): 4.8e-67
Smith-Waterman score: 1117; 82.0% identity (88.3% similar) in 205 aa overlap (1-199:1-203)
10 20 30 40 50 60
pF1KE2 MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 RQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDA
70 80 90 100 110 120
130 140 150 160 170
pF1KE2 IEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQND------RFDQFWAINRKLME
:::::::::::::::::::::::::::::::::::::::: . . : : .: :.
NP_001 IEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNDLTSFGPSIGNSWNILQKKMD
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE2 YPAEENGFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEK
. . ..:: :. . . . :.
NP_001 FVI--SPLEYIRQRLKDLSFRSCFVLWLQMDSCTH
190 200 210
>>NP_001273040 (OMIM: 604261) autophagy protein 5 isofor (91 aa)
initn: 269 init1: 256 opt: 256 Z-score: 315.3 bits: 64.5 E(85289): 8e-11
Smith-Waterman score: 256; 100.0% identity (100.0% similar) in 36 aa overlap (1-36:1-36)
10 20 30 40 50 60
pF1KE2 MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVM
::::::::::::::::::::::::::::::::::::
NP_001 MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYTDLTSFGPSIGNSWNILQKKMDFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 RQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDA
NP_001 ISPLEYIRQRLKDLSFRSCFVLWLQMDSCTH
70 80 90
275 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 16:31:42 2016 done: Sun Nov 6 16:31:43 2016
Total Scan time: 6.380 Total Display time: -0.050
Function used was FASTA [36.3.4 Apr, 2011]