FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2362, 275 aa
  1>>>pF1KE2362 275 - 275 aa - 275 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3456+/-0.000861; mu= 15.2663+/- 0.052
 mean_var=69.4190+/-14.028, 0's: 0 Z-trim(106.5): 6  B-trim: 0 in 0/50
 Lambda= 0.153934
 statistics sampled from 9033 (9037) to 9033 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.278), width:  16
 Scan time:  2.310

The best scores are:                                      opt bits E(32554)
CCDS5055.1 ATG5 gene_id:9474|Hs108|chr6            ( 275) 1913 433.7  7e-122
CCDS69159.1 ATG5 gene_id:9474|Hs108|chr6           ( 197) 1367 312.3 1.7e-85
CCDS75498.1 ATG5 gene_id:9474|Hs108|chr6           (  91)  256 65.4 1.7e-11


>>CCDS5055.1 ATG5 gene_id:9474|Hs108|chr6                 (275 aa)
 initn: 1913 init1: 1913 opt: 1913  Z-score: 2301.7  bits: 433.7 E(32554): 7e-122
Smith-Waterman score: 1913; 100.0% identity (100.0% similar) in 275 aa overlap (1-275:1-275)

               10        20        30        40        50        60
pF1KE2 MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 RQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 RQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 IEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAINRKLMEYPAEEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 IEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAINRKLMEYPAEEN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 GFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEKKNQVMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 GFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPEDGEKKNQVMI
              190       200       210       220       230       240

              250       260       270     
pF1KE2 HGIEPMLETPLQWLSEHLSYPDNFLHISIIPQPTD
       :::::::::::::::::::::::::::::::::::
CCDS50 HGIEPMLETPLQWLSEHLSYPDNFLHISIIPQPTD
              250       260       270     

>>CCDS69159.1 ATG5 gene_id:9474|Hs108|chr6                (197 aa)
 initn: 1367 init1: 1367 opt: 1367  Z-score: 1648.5  bits: 312.3 E(32554): 1.7e-85
Smith-Waterman score: 1367; 100.0% identity (100.0% similar) in 196 aa overlap (80-275:2-197)

      50        60        70        80        90       100         
pF1KE2 DKVKKHFQKVMRQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPE
                                     ::::::::::::::::::::::::::::::
CCDS69                              MHYPIGLLFDLLASSSALPWNITVHFKSFPE
                                            10        20        30 

     110       120       130       140       150       160         
pF1KE2 KDLLHCPSKDAIEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 KDLLHCPSKDAIEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAIN
              40        50        60        70        80        90 

     170       180       190       200       210       220         
pF1KE2 RKLMEYPAEENGFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 RKLMEYPAEENGFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDP
             100       110       120       130       140       150 

     230       240       250       260       270     
pF1KE2 EDGEKKNQVMIHGIEPMLETPLQWLSEHLSYPDNFLHISIIPQPTD
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 EDGEKKNQVMIHGIEPMLETPLQWLSEHLSYPDNFLHISIIPQPTD
             160       170       180       190       

>>CCDS75498.1 ATG5 gene_id:9474|Hs108|chr6                (91 aa)
 initn: 269 init1: 256 opt: 256  Z-score: 320.0  bits: 65.4 E(32554): 1.7e-11
Smith-Waterman score: 256; 100.0% identity (100.0% similar) in 36 aa overlap (1-36:1-36)

               10        20        30        40        50        60
pF1KE2 MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVM
       ::::::::::::::::::::::::::::::::::::                        
CCDS75 MTDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYTDLTSFGPSIGNSWNILQKKMDFV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 RQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDA
                                                                   
CCDS75 ISPLEYIRQRLKDLSFRSCFVLWLQMDSCTH                             
               70        80        90                              




275 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 16:31:41 2016 done: Sun Nov  6 16:31:42 2016
 Total Scan time:  2.310 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]