Result of FASTA (ccds) for
pFN21AE2324
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2324, 333 aa
1>>>pF1KE2324 333 - 333 aa - 333 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.9581+/-0.00105; mu= -3.9298+/- 0.063
mean_var=294.3977+/-58.317, 0's: 0 Z-trim(113.2): 25 B-trim: 0 in 0/54
Lambda= 0.074749
statistics sampled from 13835 (13857) to 13835 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.426), width: 16
Scan time: 2.550
The best scores are: opt bits E(32554)
CCDS6480.1 PSIP1 gene_id:11168|Hs108|chr9 ( 333) 2211 251.4 7.3e-67
CCDS83348.1 PSIP1 gene_id:11168|Hs108|chr9 ( 329) 2162 246.2 2.8e-65
CCDS6479.1 PSIP1 gene_id:11168|Hs108|chr9 ( 530) 2160 246.1 4.7e-65
CCDS32314.1 HDGFRP3 gene_id:50810|Hs108|chr15 ( 203) 613 78.9 3.8e-15
CCDS59336.1 HDGFRP2 gene_id:84717|Hs108|chr19 ( 670) 593 77.2 4.1e-14
CCDS42472.1 HDGFRP2 gene_id:84717|Hs108|chr19 ( 671) 593 77.2 4.1e-14
CCDS1156.1 HDGF gene_id:3068|Hs108|chr1 ( 240) 576 75.0 6.9e-14
>>CCDS6480.1 PSIP1 gene_id:11168|Hs108|chr9 (333 aa)
initn: 2211 init1: 2211 opt: 2211 Z-score: 1313.9 bits: 251.4 E(32554): 7.3e-67
Smith-Waterman score: 2211; 100.0% identity (100.0% similar) in 333 aa overlap (1-333:1-333)
10 20 30 40 50 60
pF1KE2 MTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 YSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKETSVSKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 YSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKETSVSKE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 DTDHEEKASNEDVTKAVDITTPKAARRGRKRKAEKQVETEEAGVVTTATASVNLKVSPKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 DTDHEEKASNEDVTKAVDITTPKAARRGRKRKAEKQVETEEAGVVTTATASVNLKVSPKR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GRPAATEVKIPKPRGRPKMVKQPCPSESDIITEEDKSKKKGQEEKQPKKQPKKDEEGQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GRPAATEVKIPKPRGRPKMVKQPCPSESDIITEEDKSKKKGQEEKQPKKQPKKDEEGQKE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 EDKPRKEPDKKEGKKEVESKRKNLAKTGVTSTSDSEEEGDDQEGEKKRKGGRNFQTAHRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 EDKPRKEPDKKEGKKEVESKRKNLAKTGVTSTSDSEEEGDDQEGEKKRKGGRNFQTAHRR
250 260 270 280 290 300
310 320 330
pF1KE2 NMLKGQHEKEAADRKRKQEEQMETEHQTTCNLQ
:::::::::::::::::::::::::::::::::
CCDS64 NMLKGQHEKEAADRKRKQEEQMETEHQTTCNLQ
310 320 330
>>CCDS83348.1 PSIP1 gene_id:11168|Hs108|chr9 (329 aa)
initn: 2162 init1: 2162 opt: 2162 Z-score: 1285.4 bits: 246.2 E(32554): 2.8e-65
Smith-Waterman score: 2162; 100.0% identity (100.0% similar) in 326 aa overlap (1-326:1-326)
10 20 30 40 50 60
pF1KE2 MTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 YSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKETSVSKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 YSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKETSVSKE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 DTDHEEKASNEDVTKAVDITTPKAARRGRKRKAEKQVETEEAGVVTTATASVNLKVSPKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 DTDHEEKASNEDVTKAVDITTPKAARRGRKRKAEKQVETEEAGVVTTATASVNLKVSPKR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GRPAATEVKIPKPRGRPKMVKQPCPSESDIITEEDKSKKKGQEEKQPKKQPKKDEEGQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 GRPAATEVKIPKPRGRPKMVKQPCPSESDIITEEDKSKKKGQEEKQPKKQPKKDEEGQKE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 EDKPRKEPDKKEGKKEVESKRKNLAKTGVTSTSDSEEEGDDQEGEKKRKGGRNFQTAHRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 EDKPRKEPDKKEGKKEVESKRKNLAKTGVTSTSDSEEEGDDQEGEKKRKGGRNFQTAHRR
250 260 270 280 290 300
310 320 330
pF1KE2 NMLKGQHEKEAADRKRKQEEQMETEHQTTCNLQ
::::::::::::::::::::::::::
CCDS83 NMLKGQHEKEAADRKRKQEEQMETEHFAL
310 320
>>CCDS6479.1 PSIP1 gene_id:11168|Hs108|chr9 (530 aa)
initn: 2247 init1: 2160 opt: 2160 Z-score: 1281.4 bits: 246.1 E(32554): 4.7e-65
Smith-Waterman score: 2160; 99.7% identity (100.0% similar) in 327 aa overlap (1-327:1-327)
10 20 30 40 50 60
pF1KE2 MTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 YSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKETSVSKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 YSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKETSVSKE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 DTDHEEKASNEDVTKAVDITTPKAARRGRKRKAEKQVETEEAGVVTTATASVNLKVSPKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 DTDHEEKASNEDVTKAVDITTPKAARRGRKRKAEKQVETEEAGVVTTATASVNLKVSPKR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GRPAATEVKIPKPRGRPKMVKQPCPSESDIITEEDKSKKKGQEEKQPKKQPKKDEEGQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GRPAATEVKIPKPRGRPKMVKQPCPSESDIITEEDKSKKKGQEEKQPKKQPKKDEEGQKE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 EDKPRKEPDKKEGKKEVESKRKNLAKTGVTSTSDSEEEGDDQEGEKKRKGGRNFQTAHRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 EDKPRKEPDKKEGKKEVESKRKNLAKTGVTSTSDSEEEGDDQEGEKKRKGGRNFQTAHRR
250 260 270 280 290 300
310 320 330
pF1KE2 NMLKGQHEKEAADRKRKQEEQMETEHQTTCNLQ
:::::::::::::::::::::::::.:
CCDS64 NMLKGQHEKEAADRKRKQEEQMETEQQNKDEGKKPEVKKVEKKRETSMDSRLQRIHAEIK
310 320 330 340 350 360
>>CCDS32314.1 HDGFRP3 gene_id:50810|Hs108|chr15 (203 aa)
initn: 604 init1: 572 opt: 613 Z-score: 385.4 bits: 78.9 E(32554): 3.8e-15
Smith-Waterman score: 613; 55.6% identity (78.8% similar) in 160 aa overlap (3-155:7-166)
10 20 30 40 50
pF1KE2 MTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPK
:..: :::.:::::::::::::.::.:.::::::.:: ::::::::::::::::
CCDS32 MARPRPREYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE2 DIFPYSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKETS
:.:::.: :.:.:: :::::::::::::.::: :::.. :: .::.. .. : . .
CCDS32 DLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADA
70 80 90 100 110 120
120 130 140 150 160
pF1KE2 VSKEDTDHEE-----KASNEDV--TKAVDITTPKAARRGRKRKAEKQVETEEAGVVTTAT
:.:. :. : : .:: . . . :. :.....:: ...
CCDS32 SSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSS
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE2 ASVNLKVSPKRGRPAATEVKIPKPRGRPKMVKQPCPSESDIITEEDKSKKKGQEEKQPKK
CCDS32 EGGDAGNDTRNTTSDLQKTSEGT
190 200
>>CCDS59336.1 HDGFRP2 gene_id:84717|Hs108|chr19 (670 aa)
initn: 648 init1: 559 opt: 593 Z-score: 366.8 bits: 77.2 E(32554): 4.1e-14
Smith-Waterman score: 671; 34.9% identity (63.7% similar) in 358 aa overlap (1-327:1-353)
10 20 30 40 50 60
pF1KE2 MTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFP
: . ::::::.:::::::::::::.:.. ::::::: :: :::::::::::::::::.::
CCDS59 MPHAFKPGDLVFAKMKGYPHWPARIDDIADGAVKPPPNKYPIFFFGTHETAFLGPKDLFP
10 20 30 40 50 60
70 80 90 100 110
pF1KE2 YSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFS------SQQAATKQSNAS--SDVEVEE
:.. :.::::::::::::::::::.:::....: :... . ..: . ::.. ..
CCDS59 YDKCKDKYGKPNKRKGFNEGLWEIQNNPHASYSAPPPVSSSDSEAPEANPADGSDADEDD
70 80 90 100 110 120
120 130 140 150
pF1KE2 KE------TSVS--------KEDTDHEEKASNEDVTKAVDITTPKAARRGRKRKAE-KQV
.. :.:. . :.: .....: . . . ....:.:: ... :.
CCDS59 EDRGVMAVTAVTATAASDRMESDSDSDKSSDNSGLKRKTPALKMSVSKRARKASSDLDQA
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE2 ETEEAGVVTTATASVNLKVSPKRGRPAA-TEVKIPK--PRGRPKMVKQPCPSESDIITEE
. . .. ..: . :.: . : . :. :. : : : : : :.:: ..
CCDS59 SVSPSEEENSESSSESEKTSDQDFTPEKKAAVRAPRRGPLGGRKKKKAPSASDSDSKADS
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE2 DKSKKKGQEEKQPKKQPKKDEEGQKEEDKPRKEP-DKKEGKKEVESKRKNLAKT---GVT
: .: . . .. ... .. . . .: : .: ..: . . : : .
CCDS59 DGAKPEPVAMARSASSSSSSSSSSDSDVSVKKPPRGRKPAEKPLPKPRGRKPKPERPPSS
250 260 270 280 290 300
280 290 300 310 320
pF1KE2 STSDSEEEGDDQEGEKKRKGGRNFQTAHRRNM-LKGQHEKEAADRKRKQEEQMETEHQTT
:.:::. . :. .: ::. . :.::.. . ..:.: :. ...:. : :..
CCDS59 SSSDSDSDEVDRISEWKRR-----DEARRRELEARRRREQEEELRRLREQEKEEKERRRE
310 320 330 340 350
330
pF1KE2 CNLQ
CCDS59 RADRGEAERGSGGSSGDELREDDEPVKKRGRKGRGRGPPSSSDSEPEAELEREAKKSAKK
360 370 380 390 400 410
>>CCDS42472.1 HDGFRP2 gene_id:84717|Hs108|chr19 (671 aa)
initn: 648 init1: 559 opt: 593 Z-score: 366.8 bits: 77.2 E(32554): 4.1e-14
Smith-Waterman score: 671; 34.9% identity (63.7% similar) in 358 aa overlap (1-327:1-353)
10 20 30 40 50 60
pF1KE2 MTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFP
: . ::::::.:::::::::::::.:.. ::::::: :: :::::::::::::::::.::
CCDS42 MPHAFKPGDLVFAKMKGYPHWPARIDDIADGAVKPPPNKYPIFFFGTHETAFLGPKDLFP
10 20 30 40 50 60
70 80 90 100 110
pF1KE2 YSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFS------SQQAATKQSNAS--SDVEVEE
:.. :.::::::::::::::::::.:::....: :... . ..: . ::.. ..
CCDS42 YDKCKDKYGKPNKRKGFNEGLWEIQNNPHASYSAPPPVSSSDSEAPEANPADGSDADEDD
70 80 90 100 110 120
120 130 140 150
pF1KE2 KE------TSVS--------KEDTDHEEKASNEDVTKAVDITTPKAARRGRKRKAE-KQV
.. :.:. . :.: .....: . . . ....:.:: ... :.
CCDS42 EDRGVMAVTAVTATAASDRMESDSDSDKSSDNSGLKRKTPALKMSVSKRARKASSDLDQA
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE2 ETEEAGVVTTATASVNLKVSPKRGRPAA-TEVKIPK--PRGRPKMVKQPCPSESDIITEE
. . .. ..: . :.: . : . :. :. : : : : : :.:: ..
CCDS42 SVSPSEEENSESSSESEKTSDQDFTPEKKAAVRAPRRGPLGGRKKKKAPSASDSDSKADS
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE2 DKSKKKGQEEKQPKKQPKKDEEGQKEEDKPRKEP-DKKEGKKEVESKRKNLAKT---GVT
: .: . . .. ... .. . . .: : .: ..: . . : : .
CCDS42 DGAKPEPVAMARSASSSSSSSSSSDSDVSVKKPPRGRKPAEKPLPKPRGRKPKPERPPSS
250 260 270 280 290 300
280 290 300 310 320
pF1KE2 STSDSEEEGDDQEGEKKRKGGRNFQTAHRRNM-LKGQHEKEAADRKRKQEEQMETEHQTT
:.:::. . :. .: ::. . :.::.. . ..:.: :. ...:. : :..
CCDS42 SSSDSDSDEVDRISEWKRR-----DEARRRELEARRRREQEEELRRLREQEKEEKERRRE
310 320 330 340 350
330
pF1KE2 CNLQ
CCDS42 RADRGEAERGSGGSSGDELREDDEPVKKRGRKGRGRGPPSSSDSEPEAELEREAKKSAKK
360 370 380 390 400 410
>>CCDS1156.1 HDGF gene_id:3068|Hs108|chr1 (240 aa)
initn: 609 init1: 535 opt: 576 Z-score: 362.8 bits: 75.0 E(32554): 6.9e-14
Smith-Waterman score: 611; 43.2% identity (64.8% similar) in 264 aa overlap (3-259:8-239)
10 20 30 40 50
pF1KE2 MTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGP
...: :::.:::::::::::::.::.:..::: .:: .:::::::::::::
CCDS11 MSRSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE2 KDIFPYSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKET
::.::: :.:::.:::::::::.::::::.::: :: :. :.. :.: :: : :
CCDS11 KDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSC----VEEPEPEP
70 80 90 100 110
120 130 140 150 160 170
pF1KE2 SVSKEDTDHEEKA--SNEDVTKAVDITTPKAARRGRKRKAEKQVETEEAGVVTTATASVN
... : :.. .: :... : : : : :.: :: . ..:: .
CCDS11 EAAEGDGDKKGNAEGSSDEEGKLV-IDEPA------KEKNEKGALKRRAGDL--------
120 130 140 150 160
180 190 200 210 220
pF1KE2 LKVSPKRGRPAATEVKIPKPRGRPKM-----VKQPCPSESDIITEEDKSKKKGQEEKQPK
:. :::: . : . :.:. : :..: : : .:.... .. . :
CCDS11 LEDSPKRPKEAEN------PEGEEKEAATLEVERPLPME----VEKNSTPSEPGSGRGP-
170 180 190 200 210
230 240 250 260 270 280
pF1KE2 KQPKKDEEGQKEEDKPRKEPDKKEGKKEVESKRKNLAKTGVTSTSDSEEEGDDQEGEKKR
:...:: . ::.. :: . : .. ::
CCDS11 --PQEEEEEEDEEEEATKEDAEAPGIRDHESL
220 230 240
290 300 310 320 330
pF1KE2 KGGRNFQTAHRRNMLKGQHEKEAADRKRKQEEQMETEHQTTCNLQ
333 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 15:50:45 2016 done: Sun Nov 6 15:50:45 2016
Total Scan time: 2.550 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]