Result of FASTA (ccds) for
pFN21AE2319
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2319, 333 aa
1>>>pF1KE2319 333 - 333 aa - 333 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.6140+/-0.000791; mu= 2.8400+/- 0.048
mean_var=201.0464+/-40.993, 0's: 0 Z-trim(115.3): 10 B-trim: 110 in 1/52
Lambda= 0.090454
statistics sampled from 15843 (15849) to 15843 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.797), E-opt: 0.2 (0.487), width: 16
Scan time: 2.960
The best scores are: opt bits E(32554)
CCDS4683.2 ATAT1 gene_id:79969|Hs108|chr6 ( 333) 2262 306.9 1.5e-83
CCDS83072.1 ATAT1 gene_id:79969|Hs108|chr6 ( 323) 2193 297.9 7.4e-81
CCDS54978.1 ATAT1 gene_id:79969|Hs108|chr6 ( 409) 1954 266.8 2.2e-71
CCDS83073.1 ATAT1 gene_id:79969|Hs108|chr6 ( 300) 1326 184.7 8e-47
CCDS59002.1 ATAT1 gene_id:79969|Hs108|chr6 ( 310) 1326 184.7 8.2e-47
>>CCDS4683.2 ATAT1 gene_id:79969|Hs108|chr6 (333 aa)
initn: 2262 init1: 2262 opt: 2262 Z-score: 1613.6 bits: 306.9 E(32554): 1.5e-83
Smith-Waterman score: 2262; 100.0% identity (100.0% similar) in 333 aa overlap (1-333:1-333)
10 20 30 40 50 60
pF1KE2 MEFPFDVDALFPERITVLDQHLRPPARRPGTTTPARVDLQQQIMTIIDELGKASAKAQNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MEFPFDVDALFPERITVLDQHLRPPARRPGTTTPARVDLQQQIMTIIDELGKASAKAQNL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 SAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKVGYKKLFVLDDREAHNEVEPLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKVGYKKLFVLDDREAHNEVEPLC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRPSQKLLKFLNKHYNLETTVPQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRPSQKLLKFLNKHYNLETTVPQV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 NNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAPARKLPPKRAEGDIKPYSSSDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 NNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAPARKLPPKRAEGDIKPYSSSDR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 EFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPERGPLRPFVPEQELLRSLRLCPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPERGPLRPFVPEQELLRSLRLCPP
250 260 270 280 290 300
310 320 330
pF1KE2 HPTARLLLAADPGGSPAQRRRTSSLPRSEESRY
:::::::::::::::::::::::::::::::::
CCDS46 HPTARLLLAADPGGSPAQRRRTSSLPRSEESRY
310 320 330
>>CCDS83072.1 ATAT1 gene_id:79969|Hs108|chr6 (323 aa)
initn: 2193 init1: 2193 opt: 2193 Z-score: 1565.2 bits: 297.9 E(32554): 7.4e-81
Smith-Waterman score: 2193; 100.0% identity (100.0% similar) in 322 aa overlap (1-322:1-322)
10 20 30 40 50 60
pF1KE2 MEFPFDVDALFPERITVLDQHLRPPARRPGTTTPARVDLQQQIMTIIDELGKASAKAQNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MEFPFDVDALFPERITVLDQHLRPPARRPGTTTPARVDLQQQIMTIIDELGKASAKAQNL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 SAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKVGYKKLFVLDDREAHNEVEPLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 SAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKVGYKKLFVLDDREAHNEVEPLC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRPSQKLLKFLNKHYNLETTVPQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 ILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRPSQKLLKFLNKHYNLETTVPQV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 NNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAPARKLPPKRAEGDIKPYSSSDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 NNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAPARKLPPKRAEGDIKPYSSSDR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 EFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPERGPLRPFVPEQELLRSLRLCPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 EFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPERGPLRPFVPEQELLRSLRLCPP
250 260 270 280 290 300
310 320 330
pF1KE2 HPTARLLLAADPGGSPAQRRRTSSLPRSEESRY
::::::::::::::::::::::
CCDS83 HPTARLLLAADPGGSPAQRRRTR
310 320
>>CCDS54978.1 ATAT1 gene_id:79969|Hs108|chr6 (409 aa)
initn: 1982 init1: 1949 opt: 1954 Z-score: 1395.2 bits: 266.8 E(32554): 2.2e-71
Smith-Waterman score: 1954; 96.3% identity (97.3% similar) in 300 aa overlap (27-326:15-314)
10 20 30 40 50 60
pF1KE2 MEFPFDVDALFPERITVLDQHLRPPARRPGTTTPARVDLQQQIMTIIDELGKASAKAQNL
:. :. ::::::::::::::::::::::::
CCDS54 MWLTWPFCFLTITLREEGVCHLESVDLQQQIMTIIDELGKASAKAQNL
10 20 30 40
70 80 90 100 110 120
pF1KE2 SAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKVGYKKLFVLDDREAHNEVEPLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKVGYKKLFVLDDREAHNEVEPLC
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE2 ILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRPSQKLLKFLNKHYNLETTVPQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRPSQKLLKFLNKHYNLETTVPQV
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE2 NNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAPARKLPPKRAEGDIKPYSSSDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 NNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAPARKLPPKRAEGDIKPYSSSDR
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE2 EFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPERGPLRPFVPEQELLRSLRLCPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPERGPLRPFVPEQELLRSLRLCPP
230 240 250 260 270 280
310 320 330
pF1KE2 HPTARLLLAADPGGSPAQRRRTSSLPRSEESRY
:::::::::::::::::::::: . :
CCDS54 HPTARLLLAADPGGSPAQRRRTRGTPPGLVAQSCCYSRHGGVNSSSPNTGNQDSKQGEQE
290 300 310 320 330 340
>>CCDS83073.1 ATAT1 gene_id:79969|Hs108|chr6 (300 aa)
initn: 2025 init1: 1300 opt: 1326 Z-score: 954.1 bits: 184.7 E(32554): 8e-47
Smith-Waterman score: 1976; 92.9% identity (92.9% similar) in 322 aa overlap (1-322:1-299)
10 20 30 40 50 60
pF1KE2 MEFPFDVDALFPERITVLDQHLRPPARRPGTTTPARVDLQQQIMTIIDELGKASAKAQNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MEFPFDVDALFPERITVLDQHLRPPARRPGTTTPARVDLQQQIMTIIDELGKASAKAQNL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 SAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKVGYKKLFVLDDREAHNEVEPLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 SAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKVGYKKLFVLDDREAHNEVEPLC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRPSQKLLKFLNKHYNLETTVPQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 ILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRPSQKLLKFLNKHYNLETTVPQV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 NNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAPARKLPPKRAEGDIKPYSSSDR
:::::::::::::: ::: ::::::::::::::::::::
CCDS83 NNFVIFEGFFAHQH-PPA----------------------RKLPPKRAEGDIKPYSSSDR
190 200 210
250 260 270 280 290 300
pF1KE2 EFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPERGPLRPFVPEQELLRSLRLCPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 EFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPERGPLRPFVPEQELLRSLRLCPP
220 230 240 250 260 270
310 320 330
pF1KE2 HPTARLLLAADPGGSPAQRRRTSSLPRSEESRY
::::::::::::::::::::::
CCDS83 HPTARLLLAADPGGSPAQRRRTR
280 290 300
>>CCDS59002.1 ATAT1 gene_id:79969|Hs108|chr6 (310 aa)
initn: 2094 init1: 1300 opt: 1326 Z-score: 953.9 bits: 184.7 E(32554): 8.2e-47
Smith-Waterman score: 2045; 93.1% identity (93.1% similar) in 333 aa overlap (1-333:1-310)
10 20 30 40 50 60
pF1KE2 MEFPFDVDALFPERITVLDQHLRPPARRPGTTTPARVDLQQQIMTIIDELGKASAKAQNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MEFPFDVDALFPERITVLDQHLRPPARRPGTTTPARVDLQQQIMTIIDELGKASAKAQNL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 SAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKVGYKKLFVLDDREAHNEVEPLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKVGYKKLFVLDDREAHNEVEPLC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRPSQKLLKFLNKHYNLETTVPQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRPSQKLLKFLNKHYNLETTVPQV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 NNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAPARKLPPKRAEGDIKPYSSSDR
:::::::::::::: ::: ::::::::::::::::::::
CCDS59 NNFVIFEGFFAHQH-PPA----------------------RKLPPKRAEGDIKPYSSSDR
190 200 210
250 260 270 280 290 300
pF1KE2 EFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPERGPLRPFVPEQELLRSLRLCPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 EFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPERGPLRPFVPEQELLRSLRLCPP
220 230 240 250 260 270
310 320 330
pF1KE2 HPTARLLLAADPGGSPAQRRRTSSLPRSEESRY
:::::::::::::::::::::::::::::::::
CCDS59 HPTARLLLAADPGGSPAQRRRTSSLPRSEESRY
280 290 300 310
333 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 16:52:34 2016 done: Sun Nov 6 16:52:35 2016
Total Scan time: 2.960 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]