FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2287, 71 aa
  1>>>pF1KE2287 71 - 71 aa - 71 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.1714+/-0.000346; mu= 12.0096+/- 0.021
 mean_var=44.9932+/- 9.721, 0's: 0 Z-trim(113.3): 7  B-trim: 869 in 1/49
 Lambda= 0.191206
 statistics sampled from 22514 (22518) to 22514 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.264), width:  16
 Scan time:  2.730

The best scores are:                                      opt bits E(85289)
NP_612145 (OMIM: 613540) serine palmitoyltransfera (  71)  481 139.5 4.3e-34
NP_001307608 (OMIM: 610412) serine palmitoyltransf (  76)  225 68.9 8.2e-13
NP_001035189 (OMIM: 610412) serine palmitoyltransf (  76)  225 68.9 8.2e-13


>>NP_612145 (OMIM: 613540) serine palmitoyltransferase s  (71 aa)
 initn: 481 init1: 481 opt: 481  Z-score: 733.1  bits: 139.5 E(85289): 4.3e-34
Smith-Waterman score: 481; 100.0% identity (100.0% similar) in 71 aa overlap (1-71:1-71)

               10        20        30        40        50        60
pF1KE2 MAGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 MAGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHI
               10        20        30        40        50        60

               70 
pF1KE2 MAILHYFEIVQ
       :::::::::::
NP_612 MAILHYFEIVQ
               70 

>>NP_001307608 (OMIM: 610412) serine palmitoyltransferas  (76 aa)
 initn: 220 init1: 220 opt: 225  Z-score: 351.0  bits: 68.9 E(85289): 8.2e-13
Smith-Waterman score: 225; 45.3% identity (79.7% similar) in 64 aa overlap (4-67:1-64)

               10        20        30        40        50        60
pF1KE2 MAGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHI
          : : :. . .::.:::: ...   .::::::..::..:..:..:..::.:::.: ::
NP_001    MDLRRVKEYFSWLYYQYQIISCCAVLEPWERSMFNTILLTIIAMVVYTAYVFIPIHI
                  10        20        30        40        50       

               70         
pF1KE2 MAILHYFEIVQ        
           ..:            
NP_001 RLAWEFFSKICGYHSTISN
        60        70      

>>NP_001035189 (OMIM: 610412) serine palmitoyltransferas  (76 aa)
 initn: 220 init1: 220 opt: 225  Z-score: 351.0  bits: 68.9 E(85289): 8.2e-13
Smith-Waterman score: 225; 45.3% identity (79.7% similar) in 64 aa overlap (4-67:1-64)

               10        20        30        40        50        60
pF1KE2 MAGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHI
          : : :. . .::.:::: ...   .::::::..::..:..:..:..::.:::.: ::
NP_001    MDLRRVKEYFSWLYYQYQIISCCAVLEPWERSMFNTILLTIIAMVVYTAYVFIPIHI
                  10        20        30        40        50       

               70         
pF1KE2 MAILHYFEIVQ        
           ..:            
NP_001 RLAWEFFSKICGYHSTISN
        60        70      




71 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:27:27 2016 done: Sun Nov  6 14:27:28 2016
 Total Scan time:  2.730 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]