FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2287, 71 aa
  1>>>pF1KE2287 71 - 71 aa - 71 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.3079+/-0.000704; mu= 11.0814+/- 0.042
 mean_var=44.5546+/- 9.266, 0's: 0 Z-trim(107.0): 16  B-trim: 0 in 0/45
 Lambda= 0.192145
 statistics sampled from 9310 (9313) to 9310 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.286), width:  16
 Scan time:  1.110

The best scores are:                                      opt bits E(32554)
CCDS9647.2 SPTSSA gene_id:171546|Hs108|chr14       (  71)  481 140.1 1.1e-34
CCDS33887.1 SPTSSB gene_id:165679|Hs108|chr3       (  76)  225 69.2 2.7e-13


>>CCDS9647.2 SPTSSA gene_id:171546|Hs108|chr14            (71 aa)
 initn: 481 init1: 481 opt: 481  Z-score: 736.3  bits: 140.1 E(32554): 1.1e-34
Smith-Waterman score: 481; 100.0% identity (100.0% similar) in 71 aa overlap (1-71:1-71)

               10        20        30        40        50        60
pF1KE2 MAGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 MAGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHI
               10        20        30        40        50        60

               70 
pF1KE2 MAILHYFEIVQ
       :::::::::::
CCDS96 MAILHYFEIVQ
               70 

>>CCDS33887.1 SPTSSB gene_id:165679|Hs108|chr3            (76 aa)
 initn: 220 init1: 220 opt: 225  Z-score: 352.3  bits: 69.2 E(32554): 2.7e-13
Smith-Waterman score: 225; 45.3% identity (79.7% similar) in 64 aa overlap (4-67:1-64)

               10        20        30        40        50        60
pF1KE2 MAGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHI
          : : :. . .::.:::: ...   .::::::..::..:..:..:..::.:::.: ::
CCDS33    MDLRRVKEYFSWLYYQYQIISCCAVLEPWERSMFNTILLTIIAMVVYTAYVFIPIHI
                  10        20        30        40        50       

               70         
pF1KE2 MAILHYFEIVQ        
           ..:            
CCDS33 RLAWEFFSKICGYHSTISN
        60        70      




71 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:27:27 2016 done: Sun Nov  6 14:27:27 2016
 Total Scan time:  1.110 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]