FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2282, 131 aa
  1>>>pF1KE2282 131 - 131 aa - 131 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1278+/-0.00062; mu= 13.5685+/- 0.038
 mean_var=77.1621+/-15.190, 0's: 0 Z-trim(112.8): 7  B-trim: 0 in 0/52
 Lambda= 0.146007
 statistics sampled from 13506 (13511) to 13506 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.415), width:  16
 Scan time:  1.790

The best scores are:                                      opt bits E(32554)
CCDS12654.1 GEMIN7 gene_id:79760|Hs108|chr19       ( 131)  874 192.1   8e-50


>>CCDS12654.1 GEMIN7 gene_id:79760|Hs108|chr19            (131 aa)
 initn: 874 init1: 874 opt: 874  Z-score: 1007.9  bits: 192.1 E(32554): 8e-50
Smith-Waterman score: 874; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131)

               10        20        30        40        50        60
pF1KE2 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MQTPVNIPVPVLRLPRGPDGFSRGFAPDGRRAPLRPEVPEIQECPIAQESLESQEQRARA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIGVQAEALLR
               70        80        90       100       110       120

              130 
pF1KE2 CSDIISYTFKP
       :::::::::::
CCDS12 CSDIISYTFKP
              130 




131 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:21:16 2016 done: Sun Nov  6 13:21:16 2016
 Total Scan time:  1.790 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]