FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2273, 559 aa
  1>>>pF1KE2273 559 - 559 aa - 559 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.5538+/-0.00109; mu= -8.6620+/- 0.065
 mean_var=342.5107+/-71.662, 0's: 0 Z-trim(113.1): 27  B-trim: 775 in 1/53
 Lambda= 0.069301
 statistics sampled from 13721 (13737) to 13721 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.422), width:  16
 Scan time:  3.520

The best scores are:                                      opt bits E(32554)
CCDS13644.1 CHAF1B gene_id:8208|Hs108|chr21        ( 559) 3734 387.2 2.8e-107


>>CCDS13644.1 CHAF1B gene_id:8208|Hs108|chr21             (559 aa)
 initn: 3734 init1: 3734 opt: 3734  Z-score: 2039.5  bits: 387.2 E(32554): 2.8e-107
Smith-Waterman score: 3734; 99.8% identity (99.8% similar) in 559 aa overlap (1-559:1-559)

               10        20        30        40        50        60
pF1KE2 MKVITCEIAWHNKEPVYSLDFQHGTAGRIHRLASAGVDTNVRIWKVEKGPDGKAIVEFLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MKVITCEIAWHNKEPVYSLDFQHGTAGRIHRLASAGVDTNVRIWKVEKGPDGKAIVEFLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 NLARHTKAVNVVRFSPTGEILASGGDDAVILLWKVNDNKEPEQIAFQDEDEAQLNKENWT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NLARHTKAVNVVRFSPTGEILASGGDDAVILLWKVNDNKEPEQIAFQDEDEAQLNKENWT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 VVKTLRGHLEDVYDICWATDGNLMASASVDNTAIIWDVSKGQKISIFNEHKSYVQGVTWD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VVKTLRGHLEDVYDICWATDGNLMASASVDNTAIIWDVSKGQKISIFNEHKSYVQGVTWD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 PLGQYVATLSCDRVLRVYSIQKKRVAFNVSKMLSGIGAEGEARSYRMFHDDSMKSFFRRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PLGQYVATLSCDRVLRVYSIQKKRVAFNVSKMLSGIGAEGEARSYRMFHDDSMKSFFRRL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 SFTPDGSLLLTPAGCVESGENVMNTTYVFSRKNLKRPIAHLPCPGKATLAVRCCPVYFEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SFTPDGSLLLTPAGCVESGENVMNTTYVFSRKNLKRPIAHLPCPGKATLAVRCCPVYFEL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 RPVVETGVELMSLPYRLVFAVASEDSVLLYDTQQSFPFGYVSNIHYHTLSDISWSSDGAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RPVVETGVELMSLPYRLVFAVASEDSVLLYDTQQSFPFGYVSNIHYHTLSDISWSSDGAF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 LAISSTDGYCSFVTFEKDELGIPLKEKPVLNMRTPDTAKKTKSQTHRGSSPGPRLVEGTP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
CCDS13 LAISSTDGYCSFVTFEKDELGIPLKEKPVLNMRTPDTAKKTKSQTHRGSSPGPRPVEGTP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE2 ASRTQDPSSPGTTPPQARQAPAPTVIRDPPSITPAVKSPLPGPSEEKTLQPSSQNTKAHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ASRTQDPSSPGTTPPQARQAPAPTVIRDPPSITPAVKSPLPGPSEEKTLQPSSQNTKAHP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE2 SRRVTLNTLQAWSKTTPRRINLTPLKTDTPPSSVPTSVISTPSTEEIQSETPGDAQGSPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SRRVTLNTLQAWSKTTPRRINLTPLKTDTPPSSVPTSVISTPSTEEIQSETPGDAQGSPP
              490       500       510       520       530       540

              550         
pF1KE2 ELKRPRLDENKGGTESLDP
       :::::::::::::::::::
CCDS13 ELKRPRLDENKGGTESLDP
              550         




559 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:05:24 2016 done: Sun Nov  6 05:05:24 2016
 Total Scan time:  3.520 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]