FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2269, 84 aa
  1>>>pF1KE2269 84 - 84 aa - 84 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0276+/-0.00049; mu= 9.6763+/- 0.030
 mean_var=52.5773+/-10.493, 0's: 0 Z-trim(114.1): 9  B-trim: 0 in 0/50
 Lambda= 0.176879
 statistics sampled from 14722 (14728) to 14722 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.823), E-opt: 0.2 (0.452), width:  16
 Scan time:  1.240

The best scores are:                                      opt bits E(32554)
CCDS34224.1 CDC42SE2 gene_id:56990|Hs108|chr5      (  84)  590 157.2 1.1e-39
CCDS981.1 CDC42SE1 gene_id:56882|Hs108|chr1        (  79)  282 78.6 4.9e-16


>>CCDS34224.1 CDC42SE2 gene_id:56990|Hs108|chr5           (84 aa)
 initn: 590 init1: 590 opt: 590  Z-score: 825.8  bits: 157.2 E(32554): 1.1e-39
Smith-Waterman score: 590; 100.0% identity (100.0% similar) in 84 aa overlap (1-84:1-84)

               10        20        30        40        50        60
pF1KE2 MSEFWLCFNCCIAEQPQPKRRRRIDRSMIGEPTNFVHTAHVGSGDLFSGMNSVSSIQNQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MSEFWLCFNCCIAEQPQPKRRRRIDRSMIGEPTNFVHTAHVGSGDLFSGMNSVSSIQNQM
               10        20        30        40        50        60

               70        80    
pF1KE2 QSKGGYGGGMPANVQMQLVDTKAG
       ::::::::::::::::::::::::
CCDS34 QSKGGYGGGMPANVQMQLVDTKAG
               70        80    

>>CCDS981.1 CDC42SE1 gene_id:56882|Hs108|chr1             (79 aa)
 initn: 305 init1: 152 opt: 282  Z-score: 401.5  bits: 78.6 E(32554): 4.9e-16
Smith-Waterman score: 282; 56.7% identity (85.1% similar) in 67 aa overlap (1-64:1-67)

               10        20         30        40          50       
pF1KE2 MSEFWLCFNCCIAEQPQPKR-RRRIDRSMIGEPTNFVHTAHVGSGDLFSG--MNSVSSIQ
       :::::  ..::..:.::::. ::::::.::::: :::: .:.:::.. .:  .  ....:
CCDS98 MSEFWHKLGCCVVEKPQPKKKRRRIDRTMIGEPMNFVHLTHIGSGEMGAGDGLAMTGAVQ
               10        20        30        40        50        60

        60        70        80    
pF1KE2 NQMQSKGGYGGGMPANVQMQLVDTKAG
       .::.:::                    
CCDS98 EQMRSKGNRDRPWSNSRGL        
               70                 




84 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 11:20:10 2016 done: Sun Nov  6 11:20:10 2016
 Total Scan time:  1.240 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]