Result of FASTA (omim) for
pFN21AE2268
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2268, 128 aa
1>>>pF1KE2268 128 - 128 aa - 128 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6193+/-0.000287; mu= 14.2229+/- 0.018
mean_var=59.3994+/-12.339, 0's: 0 Z-trim(117.3): 12 B-trim: 0 in 0/56
Lambda= 0.166411
statistics sampled from 29263 (29274) to 29263 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.74), E-opt: 0.2 (0.343), width: 16
Scan time: 4.890
The best scores are: opt bits E(85289)
NP_004909 (OMIM: 603769) T-cell leukemia/lymphoma ( 128) 889 221.0 4.1e-58
XP_016877166 (OMIM: 186960) PREDICTED: T-cell leuk ( 114) 177 50.0 1.1e-06
NP_001092195 (OMIM: 186960) T-cell leukemia/lympho ( 114) 177 50.0 1.1e-06
XP_016877165 (OMIM: 186960) PREDICTED: T-cell leuk ( 114) 177 50.0 1.1e-06
NP_068801 (OMIM: 186960) T-cell leukemia/lymphoma ( 114) 177 50.0 1.1e-06
NP_001018025 (OMIM: 300116) protein p13 MTCP-1 [Ho ( 107) 142 41.6 0.00035
>>NP_004909 (OMIM: 603769) T-cell leukemia/lymphoma prot (128 aa)
initn: 889 init1: 889 opt: 889 Z-score: 1164.3 bits: 221.0 E(85289): 4.1e-58
Smith-Waterman score: 889; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)
10 20 30 40 50 60
pF1KE2 MASEASVRLGVPPGRLWIQRPGIYEDEEGRTWVTVVVRFNPSRREWARASQGSRYEPSIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MASEASVRLGVPPGRLWIQRPGIYEDEEGRTWVTVVVRFNPSRREWARASQGSRYEPSIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 VHLWQMAVHTRELLSSGQMPFSQLPAVWQLYPGRKYRAADSSFWEIADHGQIDSMEQLVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VHLWQMAVHTRELLSSGQMPFSQLPAVWQLYPGRKYRAADSSFWEIADHGQIDSMEQLVL
70 80 90 100 110 120
pF1KE2 TYQPERKD
::::::::
NP_004 TYQPERKD
>>XP_016877166 (OMIM: 186960) PREDICTED: T-cell leukemia (114 aa)
initn: 232 init1: 161 opt: 177 Z-score: 241.2 bits: 50.0 E(85289): 1.1e-06
Smith-Waterman score: 195; 30.1% identity (60.2% similar) in 113 aa overlap (13-125:15-113)
10 20 30 40 50
pF1KE2 MASEASVRLGVPPGRLWIQRPGIYEDEEGRTWVTVVVRFNPSRREWARASQGSRYEPS
: ::: . .: ::. ..:. ...... .: .
XP_016 MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIK------------DRLQ--
10 20 30 40
60 70 80 90 100 110
pF1KE2 ITVHLWQMAVHTRELLSSGQMPFSQLPAVWQLYPGRKYRAADSSFWEIADHGQIDSMEQL
. : : . : . .. :. : :: .::::: .::..:::::... : .::..:..
XP_016 LRVLLRREDVVLGRPMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDM
50 60 70 80 90 100
120
pF1KE2 VLTYQPERKD
.: :.
XP_016 LLELLPDD
110
>>NP_001092195 (OMIM: 186960) T-cell leukemia/lymphoma p (114 aa)
initn: 232 init1: 161 opt: 177 Z-score: 241.2 bits: 50.0 E(85289): 1.1e-06
Smith-Waterman score: 195; 30.1% identity (60.2% similar) in 113 aa overlap (13-125:15-113)
10 20 30 40 50
pF1KE2 MASEASVRLGVPPGRLWIQRPGIYEDEEGRTWVTVVVRFNPSRREWARASQGSRYEPS
: ::: . .: ::. ..:. ...... .: .
NP_001 MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIK------------DRLQ--
10 20 30 40
60 70 80 90 100 110
pF1KE2 ITVHLWQMAVHTRELLSSGQMPFSQLPAVWQLYPGRKYRAADSSFWEIADHGQIDSMEQL
. : : . : . .. :. : :: .::::: .::..:::::... : .::..:..
NP_001 LRVLLRREDVVLGRPMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDM
50 60 70 80 90 100
120
pF1KE2 VLTYQPERKD
.: :.
NP_001 LLELLPDD
110
>>XP_016877165 (OMIM: 186960) PREDICTED: T-cell leukemia (114 aa)
initn: 232 init1: 161 opt: 177 Z-score: 241.2 bits: 50.0 E(85289): 1.1e-06
Smith-Waterman score: 195; 30.1% identity (60.2% similar) in 113 aa overlap (13-125:15-113)
10 20 30 40 50
pF1KE2 MASEASVRLGVPPGRLWIQRPGIYEDEEGRTWVTVVVRFNPSRREWARASQGSRYEPS
: ::: . .: ::. ..:. ...... .: .
XP_016 MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIK------------DRLQ--
10 20 30 40
60 70 80 90 100 110
pF1KE2 ITVHLWQMAVHTRELLSSGQMPFSQLPAVWQLYPGRKYRAADSSFWEIADHGQIDSMEQL
. : : . : . .. :. : :: .::::: .::..:::::... : .::..:..
XP_016 LRVLLRREDVVLGRPMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDM
50 60 70 80 90 100
120
pF1KE2 VLTYQPERKD
.: :.
XP_016 LLELLPDD
110
>>NP_068801 (OMIM: 186960) T-cell leukemia/lymphoma prot (114 aa)
initn: 232 init1: 161 opt: 177 Z-score: 241.2 bits: 50.0 E(85289): 1.1e-06
Smith-Waterman score: 195; 30.1% identity (60.2% similar) in 113 aa overlap (13-125:15-113)
10 20 30 40 50
pF1KE2 MASEASVRLGVPPGRLWIQRPGIYEDEEGRTWVTVVVRFNPSRREWARASQGSRYEPS
: ::: . .: ::. ..:. ...... .: .
NP_068 MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIK------------DRLQ--
10 20 30 40
60 70 80 90 100 110
pF1KE2 ITVHLWQMAVHTRELLSSGQMPFSQLPAVWQLYPGRKYRAADSSFWEIADHGQIDSMEQL
. : : . : . .. :. : :: .::::: .::..:::::... : .::..:..
NP_068 LRVLLRREDVVLGRPMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDM
50 60 70 80 90 100
120
pF1KE2 VLTYQPERKD
.: :.
NP_068 LLELLPDD
110
>>NP_001018025 (OMIM: 300116) protein p13 MTCP-1 [Homo s (107 aa)
initn: 202 init1: 126 opt: 142 Z-score: 196.1 bits: 41.6 E(85289): 0.00035
Smith-Waterman score: 224; 36.8% identity (63.2% similar) in 117 aa overlap (9-125:6-106)
10 20 30 40 50 60
pF1KE2 MASEASVRLGVPPGRLWIQRPGIYEDEEGRTWVTVVVRFNPSRREWARASQGSRYEPSIT
.:.:: .::... :::.:: ::::.:: . . : ::..: :
NP_001 MAGEDVGAPPDHLWVHQEGIYRDEYQRTWVAVVEEETSFLR--ARVQQ-------IQ
10 20 30 40
70 80 90 100 110 120
pF1KE2 VHLWQMAVHTRELLSSGQMPFSQLPAVWQLYPGRKYRAADSSFWEIADHGQIDSMEQLVL
: : . :.. .::.: ::: .::::: ..: .: .:.: : .. ....:.:
NP_001 VPLGD-AARPSHLLTS------QLPLMWQLYPEERYMDNNSRLWQIQHHLMVRGVQELLL
50 60 70 80 90 100
pF1KE2 TYQPERKD
:.
NP_001 KLLPDD
128 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 12:21:45 2016 done: Sun Nov 6 12:21:46 2016
Total Scan time: 4.890 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]