Result of FASTA (ccds) for
pFN21AE2264
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2264, 334 aa
1>>>pF1KE2264 334 - 334 aa - 334 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9227+/-0.000876; mu= 18.0279+/- 0.053
mean_var=64.9906+/-12.640, 0's: 0 Z-trim(105.9): 14 B-trim: 6 in 1/48
Lambda= 0.159092
statistics sampled from 8654 (8658) to 8654 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.266), width: 16
Scan time: 2.530
The best scores are: opt bits E(32554)
CCDS45445.1 LCMT1 gene_id:51451|Hs108|chr16 ( 334) 2257 526.8 9.3e-150
CCDS45446.1 LCMT1 gene_id:51451|Hs108|chr16 ( 279) 959 228.9 3.9e-60
CCDS10094.1 LCMT2 gene_id:9836|Hs108|chr15 ( 686) 618 150.9 2.8e-36
>>CCDS45445.1 LCMT1 gene_id:51451|Hs108|chr16 (334 aa)
initn: 2257 init1: 2257 opt: 2257 Z-score: 2802.1 bits: 526.8 E(32554): 9.3e-150
Smith-Waterman score: 2257; 100.0% identity (100.0% similar) in 334 aa overlap (1-334:1-334)
10 20 30 40 50 60
pF1KE2 MATRQRESSITSCCSTSSCDADDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MATRQRESSITSCCSTSSCDADDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 RKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSKYFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSKYFE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 VDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 KLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 MIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLE
250 260 270 280 290 300
310 320 330
pF1KE2 FLDEMELLEQLMRHYCLCWATKGGNELGLKEITY
::::::::::::::::::::::::::::::::::
CCDS45 FLDEMELLEQLMRHYCLCWATKGGNELGLKEITY
310 320 330
>>CCDS45446.1 LCMT1 gene_id:51451|Hs108|chr16 (279 aa)
initn: 959 init1: 959 opt: 959 Z-score: 1193.2 bits: 228.9 E(32554): 3.9e-60
Smith-Waterman score: 1771; 83.5% identity (83.5% similar) in 334 aa overlap (1-334:1-279)
10 20 30 40 50 60
pF1KE2 MATRQRESSITSCCSTSSCDADDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MATRQRESSITSCCSTSSCDADDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 RKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSKYFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSKYFE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 VDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEE
:::::::::::::::
CCDS45 VDFPMIVTRKLHSIK---------------------------------------------
130
190 200 210 220 230 240
pF1KE2 KLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQI
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ----------LPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQI
140 150 160 170 180
250 260 270 280 290 300
pF1KE2 MIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLE
190 200 210 220 230 240
310 320 330
pF1KE2 FLDEMELLEQLMRHYCLCWATKGGNELGLKEITY
::::::::::::::::::::::::::::::::::
CCDS45 FLDEMELLEQLMRHYCLCWATKGGNELGLKEITY
250 260 270
>>CCDS10094.1 LCMT2 gene_id:9836|Hs108|chr15 (686 aa)
initn: 529 init1: 339 opt: 618 Z-score: 764.7 bits: 150.9 E(32554): 2.8e-36
Smith-Waterman score: 618; 36.4% identity (65.9% similar) in 305 aa overlap (26-323:13-314)
10 20 30 40 50 60
pF1KE2 MATRQRESSITSCCSTSSCDADDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKE
:..: ....: :: .. :: .::. .: .
CCDS10 MGPRSRERRAGAVQNTNDSSALSKRSLAARGYVQDPFAALLVP-GAA
10 20 30 40
70 80 90 100 110
pF1KE2 RKAPEINRGYFARVHGVSQLIKAFLRK-----TECHCQIVNLGAGMDTTFWRLKDEDLLP
:.:: :.:::..:...: . ..:::.. . . ::..::::.:. ..::: :
CCDS10 RRAPLIHRGYYVRARAVRHCVRAFLEQIGAPQAALRAQILSLGAGFDSLYFRLKTAGRLA
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE2 -SKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRD
. .::::: .. :: . : : : . : : .. ..: : ..: :::.
CCDS10 RAAVWEVDFPDVARRKAERIGETPELCA--LTGPFERGEPASALCFESADYCILGLDLRQ
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE2 LSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMG
:...:: : .... ::::.:: ::.:. ::..: :. :::. : :.:. :::.
CCDS10 LQRVEEALGAAGLDAASPTLLLAEAVLTYLEPESAAALIAWAAQRFPNALFVVYEQMRPQ
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE2 DRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYN-RLPRAEV
: :::.:....:. . : :.: ..:.:..:.:. :: . .:::: :.:. :: :
CCDS10 DAFGQFMLQHFRQLNSPLHGLERFPDVEAQRRRFLQAGWTACGAVDMNEFYHCFLPAEER
230 240 250 260 270 280
300 310 320 330
pF1KE2 SRIESLEFLDEMELLEQLMRHYCLCWATKGGNELGLKEITY
:.:..: .::.: . :: . :..:
CCDS10 RRVENIEPFDEFEEWHLKCAHYFILAASRGDTLSHTLVFPSSEAFPRVNPASPSGVFPAS
290 300 310 320 330 340
334 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 05:06:01 2016 done: Sun Nov 6 05:06:01 2016
Total Scan time: 2.530 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]