FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2242, 347 aa
  1>>>pF1KE2242 347 - 347 aa - 347 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5709+/-0.00069; mu= 11.7374+/- 0.042
 mean_var=102.4929+/-20.138, 0's: 0 Z-trim(113.2): 15  B-trim: 0 in 0/51
 Lambda= 0.126686
 statistics sampled from 13835 (13846) to 13835 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.425), width:  16
 Scan time:  3.020

The best scores are:                                      opt bits E(32554)
CCDS42345.1 ATXN7L3 gene_id:56970|Hs108|chr17      ( 347) 2349 439.1 2.6e-123
CCDS45697.1 ATXN7L3 gene_id:56970|Hs108|chr17      ( 354) 2325 434.7 5.5e-122
CCDS53815.1 ATXN7L3B gene_id:552889|Hs108|chr12    (  97)  316 67.2 6.4e-12


>>CCDS42345.1 ATXN7L3 gene_id:56970|Hs108|chr17           (347 aa)
 initn: 2349 init1: 2349 opt: 2349  Z-score: 2327.4  bits: 439.1 E(32554): 2.6e-123
Smith-Waterman score: 2349; 100.0% identity (100.0% similar) in 347 aa overlap (1-347:1-347)

               10        20        30        40        50        60
pF1KE2 MKMEEMSLSGLDNSKLEAIAQEIYADLVEDSCLGFCFEVHRAVKCGYFFLDDTDPDSMKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MKMEEMSLSGLDNSKLEAIAQEIYADLVEDSCLGFCFEVHRAVKCGYFFLDDTDPDSMKD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 FEIVDQPGLDIFGQVFNQWKSKECVCPNCSRSIAASRFAPHLEKCLGMGRNSSRIANRRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FEIVDQPGLDIFGQVFNQWKSKECVCPNCSRSIAASRFAPHLEKCLGMGRNSSRIANRRI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 ANSNNMNKSESDQEDNDDINDNDWSYGSEKKAKKRKSDKNPNSPRRSKSLKHKNGELSNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ANSNNMNKSESDQEDNDDINDNDWSYGSEKKAKKRKSDKNPNSPRRSKSLKHKNGELSNS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 DPFKYNNSTGISYETLGPEELRSLLTTQCGVISEHTKKMCTRSLRCPQHTDEQRRTVRIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DPFKYNNSTGISYETLGPEELRSLLTTQCGVISEHTKKMCTRSLRCPQHTDEQRRTVRIY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 FLGPSAVLPEVESSLDNDSFDMTDSQALISRLQWDGSSDLSPSDSGSSKTSENQGWGLGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FLGPSAVLPEVESSLDNDSFDMTDSQALISRLQWDGSSDLSPSDSGSSKTSENQGWGLGT
              250       260       270       280       290       300

              310       320       330       340       
pF1KE2 NSSESRKTKKKKSHLSLVGTASGLGSNKKKKPKPPAPPTPSIYDDIN
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 NSSESRKTKKKKSHLSLVGTASGLGSNKKKKPKPPAPPTPSIYDDIN
              310       320       330       340       

>>CCDS45697.1 ATXN7L3 gene_id:56970|Hs108|chr17           (354 aa)
 initn: 1254 init1: 1254 opt: 2325  Z-score: 2303.5  bits: 434.7 E(32554): 5.5e-122
Smith-Waterman score: 2325; 98.0% identity (98.0% similar) in 354 aa overlap (1-347:1-354)

               10        20        30        40        50        60
pF1KE2 MKMEEMSLSGLDNSKLEAIAQEIYADLVEDSCLGFCFEVHRAVKCGYFFLDDTDPDSMKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MKMEEMSLSGLDNSKLEAIAQEIYADLVEDSCLGFCFEVHRAVKCGYFFLDDTDPDSMKD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 FEIVDQPGLDIFGQVFNQWKSKECVCPNCSRSIAASRFAPHLEKCLGMGRNSSRIANRRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FEIVDQPGLDIFGQVFNQWKSKECVCPNCSRSIAASRFAPHLEKCLGMGRNSSRIANRRI
               70        80        90       100       110       120

              130       140       150              160       170   
pF1KE2 ANSNNMNKSESDQEDNDDINDNDWSYGSEKKAKKRKSDK-------NPNSPRRSKSLKHK
       :::::::::::::::::::::::::::::::::::::::       ::::::::::::::
CCDS45 ANSNNMNKSESDQEDNDDINDNDWSYGSEKKAKKRKSDKLWYLPFQNPNSPRRSKSLKHK
              130       140       150       160       170       180

           180       190       200       210       220       230   
pF1KE2 NGELSNSDPFKYNNSTGISYETLGPEELRSLLTTQCGVISEHTKKMCTRSLRCPQHTDEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NGELSNSDPFKYNNSTGISYETLGPEELRSLLTTQCGVISEHTKKMCTRSLRCPQHTDEQ
              190       200       210       220       230       240

           240       250       260       270       280       290   
pF1KE2 RRTVRIYFLGPSAVLPEVESSLDNDSFDMTDSQALISRLQWDGSSDLSPSDSGSSKTSEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RRTVRIYFLGPSAVLPEVESSLDNDSFDMTDSQALISRLQWDGSSDLSPSDSGSSKTSEN
              250       260       270       280       290       300

           300       310       320       330       340       
pF1KE2 QGWGLGTNSSESRKTKKKKSHLSLVGTASGLGSNKKKKPKPPAPPTPSIYDDIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QGWGLGTNSSESRKTKKKKSHLSLVGTASGLGSNKKKKPKPPAPPTPSIYDDIN
              310       320       330       340       350    

>>CCDS53815.1 ATXN7L3B gene_id:552889|Hs108|chr12         (97 aa)
 initn: 331 init1: 312 opt: 316  Z-score: 327.5  bits: 67.2 E(32554): 6.4e-12
Smith-Waterman score: 316; 70.6% identity (88.2% similar) in 68 aa overlap (3-70:1-66)

               10        20        30        40        50        60
pF1KE2 MKMEEMSLSGLDNSKLEAIAQEIYADLVEDSCLGFCFEVHRAVKCGYFFLDDTDPDSMKD
         :::.::..::..::::::::::.::.::::::::::::::::::::.:. ..  :.::
CCDS53   MEEISLANLDTNKLEAIAQEIYVDLIEDSCLGFCFEVHRAVKCGYFYLEFAETGSVKD
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KE2 FEIVDQPGLDIFGQVFNQWKSKECVCPNCSRSIAASRFAPHLEKCLGMGRNSSRIANRRI
       : :  ::  :                                                  
CCDS53 FGI--QPVEDKGACRLPLCSLPGEPGNGPDQQLQRSPPEFQ                   
       60          70        80        90                          




347 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:52:43 2016 done: Mon Nov  7 15:52:44 2016
 Total Scan time:  3.020 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]