FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2240, 80 aa
  1>>>pF1KE2240 80 - 80 aa - 80 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7634+/-0.000267; mu= 6.1149+/- 0.017
 mean_var=68.9996+/-13.624, 0's: 0 Z-trim(120.1): 4  B-trim: 0 in 0/54
 Lambda= 0.154401
 statistics sampled from 34939 (34943) to 34939 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.41), width:  16
 Scan time:  3.590

The best scores are:                                      opt bits E(85289)
NP_001278667 (OMIM: 600074) signal transducer CD24 (  80)  469 112.2 8.9e-26
NP_037362 (OMIM: 600074) signal transducer CD24 is (  80)  469 112.2 8.9e-26
NP_001278666 (OMIM: 600074) signal transducer CD24 (  80)  469 112.2 8.9e-26
NP_001278668 (OMIM: 600074) signal transducer CD24 ( 129)  332 81.8 2.1e-16


>>NP_001278667 (OMIM: 600074) signal transducer CD24 iso  (80 aa)
 initn: 469 init1: 469 opt: 469  Z-score: 583.8  bits: 112.2 E(85289): 8.9e-26
Smith-Waterman score: 469; 98.8% identity (100.0% similar) in 80 aa overlap (1-80:1-80)

               10        20        30        40        50        60
pF1KE2 MGRAMVARLGLGLLLLALLLPTQIYSSETTTGTSSNSSQSTSNSGLAPNPTNATTKVAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
NP_001 MGRAMVARLGLGLLLLALLLPTQIYSSETTTGTSSNSSQSTSNSGLAPNPTNATTKAAGG
               10        20        30        40        50        60

               70        80
pF1KE2 ALQSTASLFVVSLSLLHLYS
       ::::::::::::::::::::
NP_001 ALQSTASLFVVSLSLLHLYS
               70        80

>>NP_037362 (OMIM: 600074) signal transducer CD24 isofor  (80 aa)
 initn: 469 init1: 469 opt: 469  Z-score: 583.8  bits: 112.2 E(85289): 8.9e-26
Smith-Waterman score: 469; 98.8% identity (100.0% similar) in 80 aa overlap (1-80:1-80)

               10        20        30        40        50        60
pF1KE2 MGRAMVARLGLGLLLLALLLPTQIYSSETTTGTSSNSSQSTSNSGLAPNPTNATTKVAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
NP_037 MGRAMVARLGLGLLLLALLLPTQIYSSETTTGTSSNSSQSTSNSGLAPNPTNATTKAAGG
               10        20        30        40        50        60

               70        80
pF1KE2 ALQSTASLFVVSLSLLHLYS
       ::::::::::::::::::::
NP_037 ALQSTASLFVVSLSLLHLYS
               70        80

>>NP_001278666 (OMIM: 600074) signal transducer CD24 iso  (80 aa)
 initn: 469 init1: 469 opt: 469  Z-score: 583.8  bits: 112.2 E(85289): 8.9e-26
Smith-Waterman score: 469; 98.8% identity (100.0% similar) in 80 aa overlap (1-80:1-80)

               10        20        30        40        50        60
pF1KE2 MGRAMVARLGLGLLLLALLLPTQIYSSETTTGTSSNSSQSTSNSGLAPNPTNATTKVAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
NP_001 MGRAMVARLGLGLLLLALLLPTQIYSSETTTGTSSNSSQSTSNSGLAPNPTNATTKAAGG
               10        20        30        40        50        60

               70        80
pF1KE2 ALQSTASLFVVSLSLLHLYS
       ::::::::::::::::::::
NP_001 ALQSTASLFVVSLSLLHLYS
               70        80

>>NP_001278668 (OMIM: 600074) signal transducer CD24 iso  (129 aa)
 initn: 332 init1: 332 opt: 332  Z-score: 415.6  bits: 81.8 E(85289): 2.1e-16
Smith-Waterman score: 332; 96.6% identity (100.0% similar) in 58 aa overlap (23-80:72-129)

                       10        20        30        40        50  
pF1KE2         MGRAMVARLGLGLLLLALLLPTQIYSSETTTGTSSNSSQSTSNSGLAPNPTN
                                     .:::::::::::::::::::::::::::::
NP_001 SAASRVYGCTAPARETGGWAWETLAGAGAKKIYSSETTTGTSSNSSQSTSNSGLAPNPTN
              50        60        70        80        90       100 

             60        70        80
pF1KE2 ATTKVAGGALQSTASLFVVSLSLLHLYS
       ::::.:::::::::::::::::::::::
NP_001 ATTKAAGGALQSTASLFVVSLSLLHLYS
             110       120         




80 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:55:35 2016 done: Mon Nov  7 15:55:36 2016
 Total Scan time:  3.590 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]