FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2230, 469 aa
  1>>>pF1KE2230 469 - 469 aa - 469 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8551+/-0.000918; mu= 15.0997+/- 0.055
 mean_var=73.0208+/-14.547, 0's: 0 Z-trim(106.5): 21  B-trim: 0 in 0/50
 Lambda= 0.150090
 statistics sampled from 9031 (9048) to 9031 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.278), width:  16
 Scan time:  2.560

The best scores are:                                      opt bits E(32554)
CCDS7130.1 NSUN6 gene_id:221078|Hs108|chr10        ( 469) 3109 682.6 2.4e-196


>>CCDS7130.1 NSUN6 gene_id:221078|Hs108|chr10             (469 aa)
 initn: 3109 init1: 3109 opt: 3109  Z-score: 3638.5  bits: 682.6 E(32554): 2.4e-196
Smith-Waterman score: 3109; 100.0% identity (100.0% similar) in 469 aa overlap (1-469:1-469)

               10        20        30        40        50        60
pF1KE2 MSIFPKISLRPEVENYLKEGFMNKEIVTALGKQEAERKFETLLKHLSHPPSFTTVRVNTH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 MSIFPKISLRPEVENYLKEGFMNKEIVTALGKQEAERKFETLLKHLSHPPSFTTVRVNTH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 LASVQHVKNLLLDELQKQFNGLSVPILQHPDLQDVLLIPVIGPRKNIKKQQCEAIVGAQC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 LASVQHVKNLLLDELQKQFNGLSVPILQHPDLQDVLLIPVIGPRKNIKKQQCEAIVGAQC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 GNAVLRGAHVYAPGIVSASQFMKAGDVISVYSDIKGKCKKGAKEFDGTKVFLGNGISELS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 GNAVLRGAHVYAPGIVSASQFMKAGDVISVYSDIKGKCKKGAKEFDGTKVFLGNGISELS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 RKEIFSGLPELKGMGIRMTEPVYLSPSFDSVLPRYLFLQNLPSALVSHVLNPQPGEKILD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 RKEIFSGLPELKGMGIRMTEPVYLSPSFDSVLPRYLFLQNLPSALVSHVLNPQPGEKILD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 LCAAPGGKTTHIAALMHDQGEVIALDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 LCAAPGGKTTHIAALMHDQGEVIALDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVKL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 DMVEDTEGEPPFLPESFDRILLDAPCSGMGQRPNMACTWSVKEVASYQPLQRKLFTAAVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 DMVEDTEGEPPFLPESFDRILLDAPCSGMGQRPNMACTWSVKEVASYQPLQRKLFTAAVQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 LLKPEGVLVYSTCTITLAENEEQVAWALTKFPCLQLQPQEPQIGGEGMRGAGLSCEQLKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 LLKPEGVLVYSTCTITLAENEEQVAWALTKFPCLQLQPQEPQIGGEGMRGAGLSCEQLKQ
              370       380       390       400       410       420

              430       440       450       460         
pF1KE2 LQRFDPSAVPLPDTDMDSLREARREDMLRLANKDSIGFFIAKFVKCKST
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 LQRFDPSAVPLPDTDMDSLREARREDMLRLANKDSIGFFIAKFVKCKST
              430       440       450       460         




469 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 19:05:14 2016 done: Mon Nov  7 19:05:14 2016
 Total Scan time:  2.560 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]