FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2228, 259 aa
  1>>>pF1KE2228 259 - 259 aa - 259 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2425+/-0.000887; mu= 10.0342+/- 0.053
 mean_var=76.5196+/-14.828, 0's: 0 Z-trim(106.6): 24  B-trim: 0 in 0/49
 Lambda= 0.146618
 statistics sampled from 9078 (9084) to 9078 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.279), width:  16
 Scan time:  2.260

The best scores are:                                      opt bits E(32554)
CCDS666.1 TYW3 gene_id:127253|Hs108|chr1           ( 259) 1725 374.1 5.2e-104
CCDS53334.1 TYW3 gene_id:127253|Hs108|chr1         ( 226)  932 206.4 1.4e-53


>>CCDS666.1 TYW3 gene_id:127253|Hs108|chr1                (259 aa)
 initn: 1725 init1: 1725 opt: 1725  Z-score: 1980.8  bits: 374.1 E(32554): 5.2e-104
Smith-Waterman score: 1725; 100.0% identity (100.0% similar) in 259 aa overlap (1-259:1-259)

               10        20        30        40        50        60
pF1KE2 MDRSAEFRKWKAQCLSKADLSRKGSVDEDVVELVQFLNMRDQFFTTSSCAGRILLLDRGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MDRSAEFRKWKAQCLSKADLSRKGSVDEDVVELVQFLNMRDQFFTTSSCAGRILLLDRGI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 NGFEVQKQNCCWLLVTHKLCVKDDVIVALKKANGDATLKFEPFVLHVQCRQLQDAQILHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 NGFEVQKQNCCWLLVTHKLCVKDDVIVALKKANGDATLKFEPFVLHVQCRQLQDAQILHS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 MAIDSGFRNSGITVGKRGKTMLAVRSTHGLEVPLSHKGKLMVTEEYIDFLLNVANQKMEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MAIDSGFRNSGITVGKRGKTMLAVRSTHGLEVPLSHKGKLMVTEEYIDFLLNVANQKMEE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 NKKRIERFYNCLQHALERETMTNLHPKIKEKNNSSYIHKKKRNPEKTRAQCITKESDEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 NKKRIERFYNCLQHALERETMTNLHPKIKEKNNSSYIHKKKRNPEKTRAQCITKESDEEL
              190       200       210       220       230       240

              250         
pF1KE2 ENDDDDDLGINVTIFPEDY
       :::::::::::::::::::
CCDS66 ENDDDDDLGINVTIFPEDY
              250         

>>CCDS53334.1 TYW3 gene_id:127253|Hs108|chr1              (226 aa)
 initn: 928 init1: 928 opt: 932  Z-score: 1075.2  bits: 206.4 E(32554): 1.4e-53
Smith-Waterman score: 1435; 87.3% identity (87.3% similar) in 259 aa overlap (1-259:1-226)

               10        20        30        40        50        60
pF1KE2 MDRSAEFRKWKAQCLSKADLSRKGSVDEDVVELVQFLNMRDQFFTTSSCAGRILLLDRGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MDRSAEFRKWKAQCLSKADLSRKGSVDEDVVELVQFLNMRDQFFTTSSCAGRILLLDRGI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 NGFEVQKQNCCWLLVTHKLCVKDDVIVALKKANGDATLKFEPFVLHVQCRQLQDAQILHS
       :::::::::::::::::::::::::                                 ::
CCDS53 NGFEVQKQNCCWLLVTHKLCVKDDV---------------------------------HS
               70        80                                        

              130       140       150       160       170       180
pF1KE2 MAIDSGFRNSGITVGKRGKTMLAVRSTHGLEVPLSHKGKLMVTEEYIDFLLNVANQKMEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MAIDSGFRNSGITVGKRGKTMLAVRSTHGLEVPLSHKGKLMVTEEYIDFLLNVANQKMEE
        90       100       110       120       130       140       

              190       200       210       220       230       240
pF1KE2 NKKRIERFYNCLQHALERETMTNLHPKIKEKNNSSYIHKKKRNPEKTRAQCITKESDEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NKKRIERFYNCLQHALERETMTNLHPKIKEKNNSSYIHKKKRNPEKTRAQCITKESDEEL
       150       160       170       180       190       200       

              250         
pF1KE2 ENDDDDDLGINVTIFPEDY
       :::::::::::::::::::
CCDS53 ENDDDDDLGINVTIFPEDY
       210       220      




259 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 19:15:35 2016 done: Sun Nov  6 19:15:35 2016
 Total Scan time:  2.260 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]