FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2227, 389 aa
  1>>>pF1KE2227 389 - 389 aa - 389 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6173+/-0.000738; mu= 15.2825+/- 0.044
 mean_var=65.3329+/-13.376, 0's: 0 Z-trim(109.5): 15  B-trim: 395 in 1/50
 Lambda= 0.158675
 statistics sampled from 10914 (10920) to 10914 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.335), width:  16
 Scan time:  2.930

The best scores are:                                      opt bits E(32554)
CCDS45280.1 MTFMT gene_id:123263|Hs108|chr15       ( 389) 2646 614.2 6.4e-176


>>CCDS45280.1 MTFMT gene_id:123263|Hs108|chr15            (389 aa)
 initn: 2646 init1: 2646 opt: 2646  Z-score: 3271.8  bits: 614.2 E(32554): 6.4e-176
Smith-Waterman score: 2646; 100.0% identity (100.0% similar) in 389 aa overlap (1-389:1-389)

               10        20        30        40        50        60
pF1KE2 MRVLVRRCWGPPLAHGARRGRPSPQWRALARLGWEDCRDSRVREKPPWRVLFFGTDQFAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MRVLVRRCWGPPLAHGARRGRPSPQWRALARLGWEDCRDSRVREKPPWRVLFFGTDQFAR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 EALRALHAARENKEEELIDKLEVVTMPSPSPKGLPVKQYAVQSQLPVYEWPDVGSGEYDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EALRALHAARENKEEELIDKLEVVTMPSPSPKGLPVKQYAVQSQLPVYEWPDVGSGEYDV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 GVVASFGRLLNEALILKFPYGILNVHPSCLPRWRGPAPVIHTVLHGDTVTGVTIMQIRPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GVVASFGRLLNEALILKFPYGILNVHPSCLPRWRGPAPVIHTVLHGDTVTGVTIMQIRPK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 RFDVGPILKQETVPVPPKSTAKELEAVLSRLGANMLISVLKNLPESLSNGRQQPMEGATY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RFDVGPILKQETVPVPPKSTAKELEAVLSRLGANMLISVLKNLPESLSNGRQQPMEGATY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 APKISAGTSCIKWEEQTSEQIFRLYRAIGNIIPLQTLWMANTIKLLDLVEVNSSVLADPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 APKISAGTSCIKWEEQTSEQIFRLYRAIGNIIPLQTLWMANTIKLLDLVEVNSSVLADPK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 LTGQALIPGSVIYHKQSQILLVYCKDGWIGVRSVMLKKSLTATDFYNGYLHPWYQKNSQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LTGQALIPGSVIYHKQSQILLVYCKDGWIGVRSVMLKKSLTATDFYNGYLHPWYQKNSQA
              310       320       330       340       350       360

              370       380         
pF1KE2 QPSQCRFQTLRLPTKKKQKKTVAMQQCIE
       :::::::::::::::::::::::::::::
CCDS45 QPSQCRFQTLRLPTKKKQKKTVAMQQCIE
              370       380         




389 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 10:42:14 2016 done: Sun Nov  6 10:42:15 2016
 Total Scan time:  2.930 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]