FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2226, 353 aa
  1>>>pF1KE2226 353 - 353 aa - 353 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2857+/-0.00066; mu= 17.1701+/- 0.040
 mean_var=75.2506+/-14.640, 0's: 0 Z-trim(111.5): 11  B-trim: 0 in 0/50
 Lambda= 0.147849
 statistics sampled from 12407 (12411) to 12407 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.751), E-opt: 0.2 (0.381), width:  16
 Scan time:  2.970

The best scores are:                                      opt bits E(32554)
CCDS32631.1 MRM1 gene_id:79922|Hs108|chr17         ( 353) 2371 514.6 4.9e-146


>>CCDS32631.1 MRM1 gene_id:79922|Hs108|chr17              (353 aa)
 initn: 2371 init1: 2371 opt: 2371  Z-score: 2735.2  bits: 514.6 E(32554): 4.9e-146
Smith-Waterman score: 2371; 100.0% identity (100.0% similar) in 353 aa overlap (1-353:1-353)

               10        20        30        40        50        60
pF1KE2 MALLSTVRGATWGRLVTRHFSHAARHGERPGGEELSRLLLDDLVPTSRLELLFGMTPCLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MALLSTVRGATWGRLVTRHFSHAARHGERPGGEELSRLLLDDLVPTSRLELLFGMTPCLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 ALQAARRSVARLLLQAGKAGLQGKRAELLRMAEARDIPVLRPRRQKLDTMCRYQVHQGVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ALQAARRSVARLLLQAGKAGLQGKRAELLRMAEARDIPVLRPRRQKLDTMCRYQVHQGVC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 MEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQDPRNFGAVLRSAHFLGVDKVITSRRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQDPRNFGAVLRSAHFLGVDKVITSRRN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 SCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTVGCPSTEDPQSSEIPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTVGCPSTEDPQSSEIPI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 MSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPPGLESLNVSVAAGILL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPPGLESLNVSVAAGILL
              250       260       270       280       290       300

              310       320       330       340       350   
pF1KE2 HSICSQRKGFPTEGERRQLLQDPQEPSARSEGLSMAQHPGLSSGPEKERQNEG
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 HSICSQRKGFPTEGERRQLLQDPQEPSARSEGLSMAQHPGLSSGPEKERQNEG
              310       320       330       340       350   




353 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:52:11 2016 done: Mon Nov  7 15:52:12 2016
 Total Scan time:  2.970 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]