FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2216, 219 aa 1>>>pF1KE2216 219 - 219 aa - 219 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.4819+/-0.000633; mu= 18.3027+/- 0.039 mean_var=57.1531+/-11.317, 0's: 0 Z-trim(110.1): 12 B-trim: 0 in 0/49 Lambda= 0.169650 statistics sampled from 11371 (11379) to 11371 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.35), width: 16 Scan time: 2.310 The best scores are: opt bits E(32554) CCDS32056.1 CIDEB gene_id:27141|Hs108|chr14 ( 219) 1454 363.4 6.4e-101 CCDS2587.1 CIDEC gene_id:63924|Hs108|chr3 ( 238) 545 140.9 6.4e-34 CCDS74897.1 CIDEC gene_id:63924|Hs108|chr3 ( 251) 545 140.9 6.7e-34 CCDS11856.1 CIDEA gene_id:1149|Hs108|chr18 ( 219) 507 131.6 3.8e-31 CCDS56239.1 CIDEC gene_id:63924|Hs108|chr3 ( 248) 435 114.0 8.4e-26 CCDS82731.1 CIDEC gene_id:63924|Hs108|chr3 ( 164) 433 113.4 8.6e-26 >>CCDS32056.1 CIDEB gene_id:27141|Hs108|chr14 (219 aa) initn: 1454 init1: 1454 opt: 1454 Z-score: 1925.3 bits: 363.4 E(32554): 6.4e-101 Smith-Waterman score: 1454; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:1-219) 10 20 30 40 50 60 pF1KE2 MEYLSALNPSDLLRSVSNISSEFGRRVWTSAPPPQRPFRVCDHKRTIRKGLTAATRQELL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MEYLSALNPSDLLRSVSNISSEFGRRVWTSAPPPQRPFRVCDHKRTIRKGLTAATRQELL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 AKALETLLLNGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQSWSPTRSGVLSYGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 AKALETLLLNGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQSWSPTRSGVLSYGL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 GRERPKHSKDIARFTFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGLGPKKVLRELLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 GRERPKHSKDIARFTFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGLGPKKVLRELLR 130 140 150 160 170 180 190 200 210 pF1KE2 WTSTLLQGLGHMLLGISSTLRHAVEGAEQWQQKGRLHSY ::::::::::::::::::::::::::::::::::::::: CCDS32 WTSTLLQGLGHMLLGISSTLRHAVEGAEQWQQKGRLHSY 190 200 210 >>CCDS2587.1 CIDEC gene_id:63924|Hs108|chr3 (238 aa) initn: 532 init1: 261 opt: 545 Z-score: 722.4 bits: 140.9 E(32554): 6.4e-34 Smith-Waterman score: 545; 42.2% identity (68.4% similar) in 225 aa overlap (1-218:5-228) 10 20 30 40 50 pF1KE2 MEYLSALNPSDLLRSVSNISSEFGRRVWTSAPPPQ----RPFRVCDHKRTIRKGLT :. :: : :..: : :: .: ... : : :. :: :: :..:::. CCDS25 MEYAMKSLSLLYPKSLSRHVSVRTSVVTQQL-LSEPSPKAPRARPCRVSTADRSVRKGIM 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 AATRQELLAKALETLLL-NGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQSWSPT : . ..:: :. .::.: . . ::::::::.:..:..:: : :: .::::.::.:.: CCDS25 AYSLEDLLLKVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTVFMVLQKGQKWQPP 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE2 RSGVLSYGLG-RERPKHSKDIARFTFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGLG . :. ..: .. :.:: :::.:: ::.:..: :::::::: ::.: :.. : CCDS25 SEQGTRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKATFYDTYSLSYDLHCCG 120 130 140 150 160 170 180 190 200 210 pF1KE2 PKKVLRELLRWTSTLLQGLGHMLLGISSTLRHAVEGAEQWQQ-KGRLHSY :....: .::. .:. ::.::: : :.. ....:. : ::. : CCDS25 AKRIMKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQPPKGKASSLIPTCLKILQ 180 190 200 210 220 230 >>CCDS74897.1 CIDEC gene_id:63924|Hs108|chr3 (251 aa) initn: 532 init1: 261 opt: 545 Z-score: 722.1 bits: 140.9 E(32554): 6.7e-34 Smith-Waterman score: 545; 42.2% identity (68.4% similar) in 225 aa overlap (1-218:18-241) 10 20 30 pF1KE2 MEYLSALNPSDLLRSVSNISSEFGRRVWTSAPPPQ----RPFR :. :: : :..: : :: .: ... : : :. :: : CCDS74 MRNMESNAVQLTRMEYAMKSLSLLYPKSLSRHVSVRTSVVTQQL-LSEPSPKAPRARPCR 10 20 30 40 50 40 50 60 70 80 90 pF1KE2 VCDHKRTIRKGLTAATRQELLAKALETLLL-NGVLTLVLEEDGTAVDSEDFFQLLEDDTC : :..:::. : . ..:: :. .::.: . . ::::::::.:..:..:: : :: CCDS74 VSTADRSVRKGIMAYSLEDLLLKVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTV 60 70 80 90 100 110 100 110 120 130 140 150 pF1KE2 LMVLQSGQSWSPTRSGVLSYGLG-RERPKHSKDIARFTFDVYKQNPRDLFGSLNVKATFY .::::.::.:.: . :. ..: .. :.:: :::.:: ::.:..: :::::::: CCDS74 FMVLQKGQKWQPPSEQGTRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKATFY 120 130 140 150 160 170 160 170 180 190 200 210 pF1KE2 GLYSMSCDFQGLGPKKVLRELLRWTSTLLQGLGHMLLGISSTLRHAVEGAEQWQQ-KGRL ::.: :.. : :....: .::. .:. ::.::: : :.. ....:. : ::. CCDS74 DTYSLSYDLHCCGAKRIMKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQPPKGKA 180 190 200 210 220 230 pF1KE2 HSY : CCDS74 SSLIPTCLKILQ 240 250 >>CCDS11856.1 CIDEA gene_id:1149|Hs108|chr18 (219 aa) initn: 353 init1: 187 opt: 507 Z-score: 672.7 bits: 131.6 E(32554): 3.8e-31 Smith-Waterman score: 507; 41.2% identity (71.1% similar) in 211 aa overlap (12-216:11-216) 10 20 30 40 50 60 pF1KE2 MEYLSALNPSDLLRSVSNISSEFGRRVWTSAPPPQRPFRVCDHKRTIRKGLTAATRQELL :.: .. ..:. : ..: : ::::: .: :. :.:. :.. :::. CCDS11 MEAARDYAGALIRPLTFMGSQTKRVLFTPLMHPARPFRVSNHDRSSRRGVMASSLQELI 10 20 30 40 50 70 80 90 100 110 pF1KE2 AKALETLLL-NGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQSWSPTRSGVLSYG .:.:..:.. .:..:::::::::.::.:.::: : :.: .:.:..::.: : . : . . CCDS11 SKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLGDNTHFMILEKGQKWMPGSQHVPTCS 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE2 LGRERPKHSKDIARFTFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGLGPKKVLRELL : . . ::: :::.:. ::.:..: ::::::.: .::.: :.. : : .:: :: CCDS11 -----PPKRSGIARVTFDLYRLNPKDFIGCLNVKATMYEMYSVSYDIRCTGLKGLLRSLL 120 130 140 150 160 170 180 190 200 210 pF1KE2 RWTSTLLQGLGHMLLGISSTLRHAVEGAEQW-----QQKGRLHSY :. : : :..:. ... . .... :. : :::. CCDS11 RFLSYSAQVTGQFLIYLGTYMLRVLDDKEERPSLRSQAKGRFTCG 180 190 200 210 >>CCDS56239.1 CIDEC gene_id:63924|Hs108|chr3 (248 aa) initn: 513 init1: 261 opt: 435 Z-score: 576.7 bits: 114.0 E(32554): 8.4e-26 Smith-Waterman score: 515; 40.4% identity (65.5% similar) in 235 aa overlap (1-218:5-238) 10 20 30 40 50 pF1KE2 MEYLSALNPSDLLRSVSNISSEFGRRVWTSAPPPQ----RPFRVCDHKRTIRKGLT :. :: : :..: : :: .: ... : : :. :: :: :..:::. CCDS56 MEYAMKSLSLLYPKSLSRHVSVRTSVVTQQL-LSEPSPKAPRARPCRVSTADRSVRKGIM 10 20 30 40 50 60 70 80 90 100 pF1KE2 AATRQELLAKAL----------ETLLL-NGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMV : . ..:: :. .::.: . . ::::::::.:..:..:: : :: .:: CCDS56 AYSLEDLLLKTRNPEARSQEVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTVFMV 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE2 LQSGQSWSPTRSGVLSYGLG-RERPKHSKDIARFTFDVYKQNPRDLFGSLNVKATFYGLY ::.::.:.: . :. ..: .. :.:: :::.:: ::.:..: :::::::: : CCDS56 LQKGQKWQPPSEQGTRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKATFYDTY 120 130 140 150 160 170 170 180 190 200 210 pF1KE2 SMSCDFQGLGPKKVLRELLRWTSTLLQGLGHMLLGISSTLRHAVEGAEQWQQ-KGRLHSY :.: :.. : :....: .::. .:. ::.::: : :.. ....:. : ::. : CCDS56 SLSYDLHCCGAKRIMKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQPPKGKASSL 180 190 200 210 220 230 CCDS56 IPTCLKILQ 240 >>CCDS82731.1 CIDEC gene_id:63924|Hs108|chr3 (164 aa) initn: 450 init1: 261 opt: 433 Z-score: 576.5 bits: 113.4 E(32554): 8.6e-26 Smith-Waterman score: 433; 44.2% identity (72.1% similar) in 154 aa overlap (67-218:1-154) 40 50 60 70 80 90 pF1KE2 PFRVCDHKRTIRKGLTAATRQELLAKALETLLLNGVLTLVLEEDGTAVDSEDFFQLLEDD .: . . ::::::::.:..:..:: : : CCDS82 MLADKPFFLVLEEDGTTVETEEYFQALAGD 10 20 30 100 110 120 130 140 150 pF1KE2 TCLMVLQSGQSWSPTRSGVLSYGLG-RERPKHSKDIARFTFDVYKQNPRDLFGSLNVKAT : .::::.::.:.: . :. ..: .. :.:: :::.:: ::.:..: :::::: CCDS82 TVFMVLQKGQKWQPPSEQGTRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKAT 40 50 60 70 80 90 160 170 180 190 200 210 pF1KE2 FYGLYSMSCDFQGLGPKKVLRELLRWTSTLLQGLGHMLLGISSTLRHAVEGAEQWQQ-KG :: ::.: :.. : :....: .::. .:. ::.::: : :.. ....:. : :: CCDS82 FYDTYSLSYDLHCCGAKRIMKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQPPKG 100 110 120 130 140 150 pF1KE2 RLHSY . : CCDS82 KASSLIPTCLKILQ 160 219 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 12:23:59 2016 done: Sun Nov 6 12:23:59 2016 Total Scan time: 2.310 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]