Result of FASTA (ccds) for
pFN21AE2216
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2216, 219 aa
1>>>pF1KE2216 219 - 219 aa - 219 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.4819+/-0.000633; mu= 18.3027+/- 0.039
mean_var=57.1531+/-11.317, 0's: 0 Z-trim(110.1): 12 B-trim: 0 in 0/49
Lambda= 0.169650
statistics sampled from 11371 (11379) to 11371 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.35), width: 16
Scan time: 2.310
The best scores are: opt bits E(32554)
CCDS32056.1 CIDEB gene_id:27141|Hs108|chr14 ( 219) 1454 363.4 6.4e-101
CCDS2587.1 CIDEC gene_id:63924|Hs108|chr3 ( 238) 545 140.9 6.4e-34
CCDS74897.1 CIDEC gene_id:63924|Hs108|chr3 ( 251) 545 140.9 6.7e-34
CCDS11856.1 CIDEA gene_id:1149|Hs108|chr18 ( 219) 507 131.6 3.8e-31
CCDS56239.1 CIDEC gene_id:63924|Hs108|chr3 ( 248) 435 114.0 8.4e-26
CCDS82731.1 CIDEC gene_id:63924|Hs108|chr3 ( 164) 433 113.4 8.6e-26
>>CCDS32056.1 CIDEB gene_id:27141|Hs108|chr14 (219 aa)
initn: 1454 init1: 1454 opt: 1454 Z-score: 1925.3 bits: 363.4 E(32554): 6.4e-101
Smith-Waterman score: 1454; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:1-219)
10 20 30 40 50 60
pF1KE2 MEYLSALNPSDLLRSVSNISSEFGRRVWTSAPPPQRPFRVCDHKRTIRKGLTAATRQELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MEYLSALNPSDLLRSVSNISSEFGRRVWTSAPPPQRPFRVCDHKRTIRKGLTAATRQELL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 AKALETLLLNGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQSWSPTRSGVLSYGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AKALETLLLNGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQSWSPTRSGVLSYGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 GRERPKHSKDIARFTFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGLGPKKVLRELLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GRERPKHSKDIARFTFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGLGPKKVLRELLR
130 140 150 160 170 180
190 200 210
pF1KE2 WTSTLLQGLGHMLLGISSTLRHAVEGAEQWQQKGRLHSY
:::::::::::::::::::::::::::::::::::::::
CCDS32 WTSTLLQGLGHMLLGISSTLRHAVEGAEQWQQKGRLHSY
190 200 210
>>CCDS2587.1 CIDEC gene_id:63924|Hs108|chr3 (238 aa)
initn: 532 init1: 261 opt: 545 Z-score: 722.4 bits: 140.9 E(32554): 6.4e-34
Smith-Waterman score: 545; 42.2% identity (68.4% similar) in 225 aa overlap (1-218:5-228)
10 20 30 40 50
pF1KE2 MEYLSALNPSDLLRSVSNISSEFGRRVWTSAPPPQ----RPFRVCDHKRTIRKGLT
:. :: : :..: : :: .: ... : : :. :: :: :..:::.
CCDS25 MEYAMKSLSLLYPKSLSRHVSVRTSVVTQQL-LSEPSPKAPRARPCRVSTADRSVRKGIM
10 20 30 40 50
60 70 80 90 100 110
pF1KE2 AATRQELLAKALETLLL-NGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQSWSPT
: . ..:: :. .::.: . . ::::::::.:..:..:: : :: .::::.::.:.:
CCDS25 AYSLEDLLLKVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTVFMVLQKGQKWQPP
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE2 RSGVLSYGLG-RERPKHSKDIARFTFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGLG
. :. ..: .. :.:: :::.:: ::.:..: :::::::: ::.: :.. :
CCDS25 SEQGTRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKATFYDTYSLSYDLHCCG
120 130 140 150 160 170
180 190 200 210
pF1KE2 PKKVLRELLRWTSTLLQGLGHMLLGISSTLRHAVEGAEQWQQ-KGRLHSY
:....: .::. .:. ::.::: : :.. ....:. : ::. :
CCDS25 AKRIMKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQPPKGKASSLIPTCLKILQ
180 190 200 210 220 230
>>CCDS74897.1 CIDEC gene_id:63924|Hs108|chr3 (251 aa)
initn: 532 init1: 261 opt: 545 Z-score: 722.1 bits: 140.9 E(32554): 6.7e-34
Smith-Waterman score: 545; 42.2% identity (68.4% similar) in 225 aa overlap (1-218:18-241)
10 20 30
pF1KE2 MEYLSALNPSDLLRSVSNISSEFGRRVWTSAPPPQ----RPFR
:. :: : :..: : :: .: ... : : :. :: :
CCDS74 MRNMESNAVQLTRMEYAMKSLSLLYPKSLSRHVSVRTSVVTQQL-LSEPSPKAPRARPCR
10 20 30 40 50
40 50 60 70 80 90
pF1KE2 VCDHKRTIRKGLTAATRQELLAKALETLLL-NGVLTLVLEEDGTAVDSEDFFQLLEDDTC
: :..:::. : . ..:: :. .::.: . . ::::::::.:..:..:: : ::
CCDS74 VSTADRSVRKGIMAYSLEDLLLKVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTV
60 70 80 90 100 110
100 110 120 130 140 150
pF1KE2 LMVLQSGQSWSPTRSGVLSYGLG-RERPKHSKDIARFTFDVYKQNPRDLFGSLNVKATFY
.::::.::.:.: . :. ..: .. :.:: :::.:: ::.:..: ::::::::
CCDS74 FMVLQKGQKWQPPSEQGTRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKATFY
120 130 140 150 160 170
160 170 180 190 200 210
pF1KE2 GLYSMSCDFQGLGPKKVLRELLRWTSTLLQGLGHMLLGISSTLRHAVEGAEQWQQ-KGRL
::.: :.. : :....: .::. .:. ::.::: : :.. ....:. : ::.
CCDS74 DTYSLSYDLHCCGAKRIMKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQPPKGKA
180 190 200 210 220 230
pF1KE2 HSY
:
CCDS74 SSLIPTCLKILQ
240 250
>>CCDS11856.1 CIDEA gene_id:1149|Hs108|chr18 (219 aa)
initn: 353 init1: 187 opt: 507 Z-score: 672.7 bits: 131.6 E(32554): 3.8e-31
Smith-Waterman score: 507; 41.2% identity (71.1% similar) in 211 aa overlap (12-216:11-216)
10 20 30 40 50 60
pF1KE2 MEYLSALNPSDLLRSVSNISSEFGRRVWTSAPPPQRPFRVCDHKRTIRKGLTAATRQELL
:.: .. ..:. : ..: : ::::: .: :. :.:. :.. :::.
CCDS11 MEAARDYAGALIRPLTFMGSQTKRVLFTPLMHPARPFRVSNHDRSSRRGVMASSLQELI
10 20 30 40 50
70 80 90 100 110
pF1KE2 AKALETLLL-NGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQSWSPTRSGVLSYG
.:.:..:.. .:..:::::::::.::.:.::: : :.: .:.:..::.: : . : . .
CCDS11 SKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLGDNTHFMILEKGQKWMPGSQHVPTCS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE2 LGRERPKHSKDIARFTFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGLGPKKVLRELL
: . . ::: :::.:. ::.:..: ::::::.: .::.: :.. : : .:: ::
CCDS11 -----PPKRSGIARVTFDLYRLNPKDFIGCLNVKATMYEMYSVSYDIRCTGLKGLLRSLL
120 130 140 150 160 170
180 190 200 210
pF1KE2 RWTSTLLQGLGHMLLGISSTLRHAVEGAEQW-----QQKGRLHSY
:. : : :..:. ... . .... :. : :::.
CCDS11 RFLSYSAQVTGQFLIYLGTYMLRVLDDKEERPSLRSQAKGRFTCG
180 190 200 210
>>CCDS56239.1 CIDEC gene_id:63924|Hs108|chr3 (248 aa)
initn: 513 init1: 261 opt: 435 Z-score: 576.7 bits: 114.0 E(32554): 8.4e-26
Smith-Waterman score: 515; 40.4% identity (65.5% similar) in 235 aa overlap (1-218:5-238)
10 20 30 40 50
pF1KE2 MEYLSALNPSDLLRSVSNISSEFGRRVWTSAPPPQ----RPFRVCDHKRTIRKGLT
:. :: : :..: : :: .: ... : : :. :: :: :..:::.
CCDS56 MEYAMKSLSLLYPKSLSRHVSVRTSVVTQQL-LSEPSPKAPRARPCRVSTADRSVRKGIM
10 20 30 40 50
60 70 80 90 100
pF1KE2 AATRQELLAKAL----------ETLLL-NGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMV
: . ..:: :. .::.: . . ::::::::.:..:..:: : :: .::
CCDS56 AYSLEDLLLKTRNPEARSQEVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTVFMV
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE2 LQSGQSWSPTRSGVLSYGLG-RERPKHSKDIARFTFDVYKQNPRDLFGSLNVKATFYGLY
::.::.:.: . :. ..: .. :.:: :::.:: ::.:..: :::::::: :
CCDS56 LQKGQKWQPPSEQGTRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKATFYDTY
120 130 140 150 160 170
170 180 190 200 210
pF1KE2 SMSCDFQGLGPKKVLRELLRWTSTLLQGLGHMLLGISSTLRHAVEGAEQWQQ-KGRLHSY
:.: :.. : :....: .::. .:. ::.::: : :.. ....:. : ::. :
CCDS56 SLSYDLHCCGAKRIMKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQPPKGKASSL
180 190 200 210 220 230
CCDS56 IPTCLKILQ
240
>>CCDS82731.1 CIDEC gene_id:63924|Hs108|chr3 (164 aa)
initn: 450 init1: 261 opt: 433 Z-score: 576.5 bits: 113.4 E(32554): 8.6e-26
Smith-Waterman score: 433; 44.2% identity (72.1% similar) in 154 aa overlap (67-218:1-154)
40 50 60 70 80 90
pF1KE2 PFRVCDHKRTIRKGLTAATRQELLAKALETLLLNGVLTLVLEEDGTAVDSEDFFQLLEDD
.: . . ::::::::.:..:..:: : :
CCDS82 MLADKPFFLVLEEDGTTVETEEYFQALAGD
10 20 30
100 110 120 130 140 150
pF1KE2 TCLMVLQSGQSWSPTRSGVLSYGLG-RERPKHSKDIARFTFDVYKQNPRDLFGSLNVKAT
: .::::.::.:.: . :. ..: .. :.:: :::.:: ::.:..: ::::::
CCDS82 TVFMVLQKGQKWQPPSEQGTRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKAT
40 50 60 70 80 90
160 170 180 190 200 210
pF1KE2 FYGLYSMSCDFQGLGPKKVLRELLRWTSTLLQGLGHMLLGISSTLRHAVEGAEQWQQ-KG
:: ::.: :.. : :....: .::. .:. ::.::: : :.. ....:. : ::
CCDS82 FYDTYSLSYDLHCCGAKRIMKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQPPKG
100 110 120 130 140 150
pF1KE2 RLHSY
. :
CCDS82 KASSLIPTCLKILQ
160
219 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 12:23:59 2016 done: Sun Nov 6 12:23:59 2016
Total Scan time: 2.310 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]