FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2215, 452 aa
  1>>>pF1KE2215 452 - 452 aa - 452 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9364+/-0.00111; mu= 10.4070+/- 0.066
 mean_var=121.5493+/-23.795, 0's: 0 Z-trim(106.7): 24  B-trim: 15 in 1/49
 Lambda= 0.116332
 statistics sampled from 9135 (9151) to 9135 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.281), width:  16
 Scan time:  3.070

The best scores are:                                      opt bits E(32554)
CCDS12192.1 TIMM44 gene_id:10469|Hs108|chr19       ( 452) 2956 507.5 1.1e-143


>>CCDS12192.1 TIMM44 gene_id:10469|Hs108|chr19            (452 aa)
 initn: 2956 init1: 2956 opt: 2956  Z-score: 2693.2  bits: 507.5 E(32554): 1.1e-143
Smith-Waterman score: 2956; 100.0% identity (100.0% similar) in 452 aa overlap (1-452:1-452)

               10        20        30        40        50        60
pF1KE2 MAAAALRSGWCRCPRRCLGSGIQFLSSHNLPHGSTYQMRRPGGELPLSKSYSSGNRKGFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAAAALRSGWCRCPRRCLGSGIQFLSSHNLPHGSTYQMRRPGGELPLSKSYSSGNRKGFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 SGLLDNVKQELAKNKEMKESIKKFRDEARRLEESDVLQEARRKYKTIESETVRTSEVLRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SGLLDNVKQELAKNKEMKESIKKFRDEARRLEESDVLQEARRKYKTIESETVRTSEVLRK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 KLGELTGTVKESLHEVSKSDLGRKIKEGVEEAAKTAKQSAESVSKGGEKLGRTAAFRALS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KLGELTGTVKESLHEVSKSDLGRKIKEGVEEAAKTAKQSAESVSKGGEKLGRTAAFRALS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 QGVESVKKEIDDSVLGQTGPYRRPQRLRKRTEFAGDKFKEEKVFEPNEEALGVVLHKDSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QGVESVKKEIDDSVLGQTGPYRRPQRLRKRTEFAGDKFKEEKVFEPNEEALGVVLHKDSK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 WYQQWKDFKENNVVFNRFFEMKMKYDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 WYQQWKDFKENNVVFNRFFEMKMKYDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 TEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 LGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LGLQFHSRILDIDNVDLAMGKMMEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRML
              370       380       390       400       410       420

              430       440       450  
pF1KE2 YVWALCRDQDELNPYAAWRLLDISASSTEQIL
       ::::::::::::::::::::::::::::::::
CCDS12 YVWALCRDQDELNPYAAWRLLDISASSTEQIL
              430       440       450  




452 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 23:59:42 2016 done: Sun Nov  6 23:59:42 2016
 Total Scan time:  3.070 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]