FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2208, 256 aa 1>>>pF1KE2208 256 - 256 aa - 256 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3449+/-0.000684; mu= 15.1529+/- 0.041 mean_var=71.4494+/-14.211, 0's: 0 Z-trim(110.2): 23 B-trim: 2 in 1/52 Lambda= 0.151731 statistics sampled from 11441 (11447) to 11441 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.352), width: 16 Scan time: 2.360 The best scores are: opt bits E(32554) CCDS32349.1 MRPL28 gene_id:10573|Hs108|chr16 ( 256) 1752 392.1 2e-109 >>CCDS32349.1 MRPL28 gene_id:10573|Hs108|chr16 (256 aa) initn: 1752 init1: 1752 opt: 1752 Z-score: 2077.9 bits: 392.1 E(32554): 2e-109 Smith-Waterman score: 1752; 100.0% identity (100.0% similar) in 256 aa overlap (1-256:1-256) 10 20 30 40 50 60 pF1KE2 MPLHKYPVWLWKRLQLREGICSRLPGHYLRSLEEERTPTPVHYRPHGAKFKINPKNGQRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MPLHKYPVWLWKRLQLREGICSRLPGHYLRSLEEERTPTPVHYRPHGAKFKINPKNGQRE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 RVEDVPIPIYFPPESQRGLWGGEGWILGQIYANNDKLSKRLKKVWKPQLFEREFYSEILD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 RVEDVPIPIYFPPESQRGLWGGEGWILGQIYANNDKLSKRLKKVWKPQLFEREFYSEILD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 KKFTVTVTMRTLDLIDEAYGLDFYILKTPKEDLCSKFGMDLKRGMLLRLARQDPQLHPED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 KKFTVTVTMRTLDLIDEAYGLDFYILKTPKEDLCSKFGMDLKRGMLLRLARQDPQLHPED 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 PERRAAIYDKYKEFAIPEEEAEWVGLTLEEAIEKQRLLEEKDPVPLFKIYVAELIQQLQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 PERRAAIYDKYKEFAIPEEEAEWVGLTLEEAIEKQRLLEEKDPVPLFKIYVAELIQQLQQ 190 200 210 220 230 240 250 pF1KE2 QALSEPAVVQKRASGQ :::::::::::::::: CCDS32 QALSEPAVVQKRASGQ 250 256 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 15:53:54 2016 done: Mon Nov 7 15:53:55 2016 Total Scan time: 2.360 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]