FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2208, 256 aa
  1>>>pF1KE2208 256 - 256 aa - 256 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3449+/-0.000684; mu= 15.1529+/- 0.041
 mean_var=71.4494+/-14.211, 0's: 0 Z-trim(110.2): 23  B-trim: 2 in 1/52
 Lambda= 0.151731
 statistics sampled from 11441 (11447) to 11441 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.352), width:  16
 Scan time:  2.360

The best scores are:                                      opt bits E(32554)
CCDS32349.1 MRPL28 gene_id:10573|Hs108|chr16       ( 256) 1752 392.1  2e-109


>>CCDS32349.1 MRPL28 gene_id:10573|Hs108|chr16            (256 aa)
 initn: 1752 init1: 1752 opt: 1752  Z-score: 2077.9  bits: 392.1 E(32554): 2e-109
Smith-Waterman score: 1752; 100.0% identity (100.0% similar) in 256 aa overlap (1-256:1-256)

               10        20        30        40        50        60
pF1KE2 MPLHKYPVWLWKRLQLREGICSRLPGHYLRSLEEERTPTPVHYRPHGAKFKINPKNGQRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MPLHKYPVWLWKRLQLREGICSRLPGHYLRSLEEERTPTPVHYRPHGAKFKINPKNGQRE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 RVEDVPIPIYFPPESQRGLWGGEGWILGQIYANNDKLSKRLKKVWKPQLFEREFYSEILD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RVEDVPIPIYFPPESQRGLWGGEGWILGQIYANNDKLSKRLKKVWKPQLFEREFYSEILD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 KKFTVTVTMRTLDLIDEAYGLDFYILKTPKEDLCSKFGMDLKRGMLLRLARQDPQLHPED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KKFTVTVTMRTLDLIDEAYGLDFYILKTPKEDLCSKFGMDLKRGMLLRLARQDPQLHPED
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 PERRAAIYDKYKEFAIPEEEAEWVGLTLEEAIEKQRLLEEKDPVPLFKIYVAELIQQLQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PERRAAIYDKYKEFAIPEEEAEWVGLTLEEAIEKQRLLEEKDPVPLFKIYVAELIQQLQQ
              190       200       210       220       230       240

              250      
pF1KE2 QALSEPAVVQKRASGQ
       ::::::::::::::::
CCDS32 QALSEPAVVQKRASGQ
              250      




256 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:53:54 2016 done: Mon Nov  7 15:53:55 2016
 Total Scan time:  2.360 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]