Result of FASTA (omim) for
pFN21AE2192
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2192, 574 aa
1>>>pF1KE2192 574 - 574 aa - 574 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6389+/-0.000386; mu= 11.7095+/- 0.024
mean_var=91.7578+/-18.250, 0's: 0 Z-trim(113.6): 109 B-trim: 253 in 1/53
Lambda= 0.133891
statistics sampled from 22979 (23090) to 22979 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.643), E-opt: 0.2 (0.271), width: 16
Scan time: 10.420
The best scores are: opt bits E(85289)
NP_001263199 (OMIM: 603574) methyl-CpG-binding dom ( 574) 3845 753.4 4.6e-217
NP_003916 (OMIM: 603574) methyl-CpG-binding domain ( 580) 3823 749.1 8.9e-216
NP_001263200 (OMIM: 603574) methyl-CpG-binding dom ( 572) 3639 713.6 4.4e-205
NP_001263201 (OMIM: 603574) methyl-CpG-binding dom ( 540) 3505 687.7 2.6e-197
NP_001263202 (OMIM: 603574) methyl-CpG-binding dom ( 262) 1267 255.3 1.9e-67
XP_011511570 (OMIM: 603574) PREDICTED: methyl-CpG- ( 185) 1253 252.5 8.9e-67
XP_011529468 (OMIM: 300005,300055,300260,300496,30 ( 393) 258 60.4 1.3e-08
NP_001303266 (OMIM: 300005,300055,300260,300496,30 ( 393) 258 60.4 1.3e-08
XP_016885022 (OMIM: 300005,300055,300260,300496,30 ( 393) 258 60.4 1.3e-08
XP_005274739 (OMIM: 300005,300055,300260,300496,30 ( 393) 258 60.4 1.3e-08
NP_004983 (OMIM: 300005,300055,300260,300496,30067 ( 486) 258 60.4 1.5e-08
NP_001104262 (OMIM: 300005,300055,300260,300496,30 ( 498) 258 60.5 1.5e-08
NP_001268382 (OMIM: 603573) methyl-CpG-binding dom ( 291) 165 42.4 0.0025
>>NP_001263199 (OMIM: 603574) methyl-CpG-binding domain (574 aa)
initn: 3845 init1: 3845 opt: 3845 Z-score: 4017.9 bits: 753.4 E(85289): 4.6e-217
Smith-Waterman score: 3845; 100.0% identity (100.0% similar) in 574 aa overlap (1-574:1-574)
10 20 30 40 50 60
pF1KE2 MGTTGLESLSLGDRGAAPTVTSSERLVPDPPNDLRKEDVAMELERVGEDEEQMMIKRSSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGTTGLESLSLGDRGAAPTVTSSERLVPDPPNDLRKEDVAMELERVGEDEEQMMIKRSSE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 CNPLLQEPIASAQFGATAGTECRKSVPCGWERVVKQRLFGKTAGRFDVYFISPQGLKFRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CNPLLQEPIASAQFGATAGTECRKSVPCGWERVVKQRLFGKTAGRFDVYFISPQGLKFRS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 KSSLANYLHKNGETSLKPEDFDFTVLSKRGIKSRYKDCSMAALTSHLQNQSNNSNWNLRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KSSLANYLHKNGETSLKPEDFDFTVLSKRGIKSRYKDCSMAALTSHLQNQSNNSNWNLRT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 RSKCKKDVFMPPSSSSELQESRGLSNFTSTHLLLKEDEGVDDVNFRKVRKPKGKVTILKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSKCKKDVFMPPSSSSELQESRGLSNFTSTHLLLKEDEGVDDVNFRKVRKPKGKVTILKG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 IPIKKTKKGCRKSCSGFVQSDSKRESVCNKADAESEPVAQKSQLDRTVCISDAGACGETL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPIKKTKKGCRKSCSGFVQSDSKRESVCNKADAESEPVAQKSQLDRTVCISDAGACGETL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 SVTSEENSLVKKKERSLSSGSNFCSEQKTSGIINKFCSAKDSEHNEKYEDTFLESEEIGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVTSEENSLVKKKERSLSSGSNFCSEQKTSGIINKFCSAKDSEHNEKYEDTFLESEEIGT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 KVEVVERKEHLHTDILKRGSEMDNNCSPTRKDFTEDTIPRTQIERRKTSLYFSSKYNKEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVEVVERKEHLHTDILKRGSEMDNNCSPTRKDFTEDTIPRTQIERRKTSLYFSSKYNKEA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 LSPPRRKAFKKWTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSPPRRKAFKKWTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 SAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYR
490 500 510 520 530 540
550 560 570
pF1KE2 IFCVNEWKQVHPEDHKLNKYHDWLWENHEKLSLS
::::::::::::::::::::::::::::::::::
NP_001 IFCVNEWKQVHPEDHKLNKYHDWLWENHEKLSLS
550 560 570
>>NP_003916 (OMIM: 603574) methyl-CpG-binding domain pro (580 aa)
initn: 2598 init1: 2598 opt: 3823 Z-score: 3994.9 bits: 749.1 E(85289): 8.9e-216
Smith-Waterman score: 3823; 99.0% identity (99.0% similar) in 580 aa overlap (1-574:1-580)
10 20 30 40 50 60
pF1KE2 MGTTGLESLSLGDRGAAPTVTSSERLVPDPPNDLRKEDVAMELERVGEDEEQMMIKRSSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MGTTGLESLSLGDRGAAPTVTSSERLVPDPPNDLRKEDVAMELERVGEDEEQMMIKRSSE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 CNPLLQEPIASAQFGATAGTECRKSVPCGWERVVKQRLFGKTAGRFDVYFISPQGLKFRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 CNPLLQEPIASAQFGATAGTECRKSVPCGWERVVKQRLFGKTAGRFDVYFISPQGLKFRS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 KSSLANYLHKNGETSLKPEDFDFTVLSKRGIKSRYKDCSMAALTSHLQNQSNNSNWNLRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KSSLANYLHKNGETSLKPEDFDFTVLSKRGIKSRYKDCSMAALTSHLQNQSNNSNWNLRT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 RSKCKKDVFMPPSSSSELQESRGLSNFTSTHLLLKEDEGVDDVNFRKVRKPKGKVTILKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RSKCKKDVFMPPSSSSELQESRGLSNFTSTHLLLKEDEGVDDVNFRKVRKPKGKVTILKG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 IPIKKTKKGCRKSCSGFVQSDSKRESVCNKADAESEPVAQKSQLDRTVCISDAGACGETL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 IPIKKTKKGCRKSCSGFVQSDSKRESVCNKADAESEPVAQKSQLDRTVCISDAGACGETL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 SVTSEENSLVKKKERSLSSGSNFCSEQKTSGIINKFCSAKDSEHNEKYEDTFLESEEIGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SVTSEENSLVKKKERSLSSGSNFCSEQKTSGIINKFCSAKDSEHNEKYEDTFLESEEIGT
310 320 330 340 350 360
370 380 390 400 410
pF1KE2 KVEVVERKEHLHTDILKRGSEMDNNCSPTRKDFT------EDTIPRTQIERRKTSLYFSS
:::::::::::::::::::::::::::::::::: ::::::::::::::::::::
NP_003 KVEVVERKEHLHTDILKRGSEMDNNCSPTRKDFTGEKIFQEDTIPRTQIERRKTSLYFSS
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE2 KYNKEALSPPRRKAFKKWTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KYNKEALSPPRRKAFKKWTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWK
430 440 450 460 470 480
480 490 500 510 520 530
pF1KE2 FLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 FLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKY
490 500 510 520 530 540
540 550 560 570
pF1KE2 GNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHEKLSLS
::::::::::::::::::::::::::::::::::::::::
NP_003 GNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHEKLSLS
550 560 570 580
>>NP_001263200 (OMIM: 603574) methyl-CpG-binding domain (572 aa)
initn: 2598 init1: 2598 opt: 3639 Z-score: 3802.9 bits: 713.6 E(85289): 4.4e-205
Smith-Waterman score: 3639; 98.9% identity (98.9% similar) in 556 aa overlap (1-550:1-556)
10 20 30 40 50 60
pF1KE2 MGTTGLESLSLGDRGAAPTVTSSERLVPDPPNDLRKEDVAMELERVGEDEEQMMIKRSSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGTTGLESLSLGDRGAAPTVTSSERLVPDPPNDLRKEDVAMELERVGEDEEQMMIKRSSE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 CNPLLQEPIASAQFGATAGTECRKSVPCGWERVVKQRLFGKTAGRFDVYFISPQGLKFRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CNPLLQEPIASAQFGATAGTECRKSVPCGWERVVKQRLFGKTAGRFDVYFISPQGLKFRS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 KSSLANYLHKNGETSLKPEDFDFTVLSKRGIKSRYKDCSMAALTSHLQNQSNNSNWNLRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KSSLANYLHKNGETSLKPEDFDFTVLSKRGIKSRYKDCSMAALTSHLQNQSNNSNWNLRT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 RSKCKKDVFMPPSSSSELQESRGLSNFTSTHLLLKEDEGVDDVNFRKVRKPKGKVTILKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSKCKKDVFMPPSSSSELQESRGLSNFTSTHLLLKEDEGVDDVNFRKVRKPKGKVTILKG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 IPIKKTKKGCRKSCSGFVQSDSKRESVCNKADAESEPVAQKSQLDRTVCISDAGACGETL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPIKKTKKGCRKSCSGFVQSDSKRESVCNKADAESEPVAQKSQLDRTVCISDAGACGETL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 SVTSEENSLVKKKERSLSSGSNFCSEQKTSGIINKFCSAKDSEHNEKYEDTFLESEEIGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVTSEENSLVKKKERSLSSGSNFCSEQKTSGIINKFCSAKDSEHNEKYEDTFLESEEIGT
310 320 330 340 350 360
370 380 390 400 410
pF1KE2 KVEVVERKEHLHTDILKRGSEMDNNCSPTRKDFT------EDTIPRTQIERRKTSLYFSS
:::::::::::::::::::::::::::::::::: ::::::::::::::::::::
NP_001 KVEVVERKEHLHTDILKRGSEMDNNCSPTRKDFTGEKIFQEDTIPRTQIERRKTSLYFSS
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE2 KYNKEALSPPRRKAFKKWTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KYNKEALSPPRRKAFKKWTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWK
430 440 450 460 470 480
480 490 500 510 520 530
pF1KE2 FLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKY
490 500 510 520 530 540
540 550 560 570
pF1KE2 GNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHEKLSLS
::::::::::::::::
NP_001 GNDSYRIFCVNEWKQVRLTPIHNSAHLVSEAK
550 560 570
>>NP_001263201 (OMIM: 603574) methyl-CpG-binding domain (540 aa)
initn: 2598 init1: 2598 opt: 3505 Z-score: 3663.4 bits: 687.7 E(85289): 2.6e-197
Smith-Waterman score: 3505; 98.9% identity (98.9% similar) in 538 aa overlap (1-532:1-538)
10 20 30 40 50 60
pF1KE2 MGTTGLESLSLGDRGAAPTVTSSERLVPDPPNDLRKEDVAMELERVGEDEEQMMIKRSSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGTTGLESLSLGDRGAAPTVTSSERLVPDPPNDLRKEDVAMELERVGEDEEQMMIKRSSE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 CNPLLQEPIASAQFGATAGTECRKSVPCGWERVVKQRLFGKTAGRFDVYFISPQGLKFRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CNPLLQEPIASAQFGATAGTECRKSVPCGWERVVKQRLFGKTAGRFDVYFISPQGLKFRS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 KSSLANYLHKNGETSLKPEDFDFTVLSKRGIKSRYKDCSMAALTSHLQNQSNNSNWNLRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KSSLANYLHKNGETSLKPEDFDFTVLSKRGIKSRYKDCSMAALTSHLQNQSNNSNWNLRT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 RSKCKKDVFMPPSSSSELQESRGLSNFTSTHLLLKEDEGVDDVNFRKVRKPKGKVTILKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSKCKKDVFMPPSSSSELQESRGLSNFTSTHLLLKEDEGVDDVNFRKVRKPKGKVTILKG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 IPIKKTKKGCRKSCSGFVQSDSKRESVCNKADAESEPVAQKSQLDRTVCISDAGACGETL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPIKKTKKGCRKSCSGFVQSDSKRESVCNKADAESEPVAQKSQLDRTVCISDAGACGETL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 SVTSEENSLVKKKERSLSSGSNFCSEQKTSGIINKFCSAKDSEHNEKYEDTFLESEEIGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVTSEENSLVKKKERSLSSGSNFCSEQKTSGIINKFCSAKDSEHNEKYEDTFLESEEIGT
310 320 330 340 350 360
370 380 390 400 410
pF1KE2 KVEVVERKEHLHTDILKRGSEMDNNCSPTRKDFT------EDTIPRTQIERRKTSLYFSS
:::::::::::::::::::::::::::::::::: ::::::::::::::::::::
NP_001 KVEVVERKEHLHTDILKRGSEMDNNCSPTRKDFTGEKIFQEDTIPRTQIERRKTSLYFSS
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE2 KYNKEALSPPRRKAFKKWTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KYNKEALSPPRRKAFKKWTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWK
430 440 450 460 470 480
480 490 500 510 520 530
pF1KE2 FLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGAP
490 500 510 520 530 540
540 550 560 570
pF1KE2 GNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHEKLSLS
>>NP_001263202 (OMIM: 603574) methyl-CpG-binding domain (262 aa)
initn: 1272 init1: 1246 opt: 1267 Z-score: 1332.1 bits: 255.3 E(85289): 1.9e-67
Smith-Waterman score: 1267; 80.8% identity (87.6% similar) in 234 aa overlap (341-574:29-262)
320 330 340 350 360 370
pF1KE2 KKKERSLSSGSNFCSEQKTSGIINKFCSAKDSEHNEKYEDTFLESEEIGTKVEVVERKEH
: .. . ::. .: :..: : . :.
NP_001 MGTTGLESLSLGDRGAAPTVTSSERLVPDPPNDLRKEDVAMELERVGEDEEQMMIKRS
10 20 30 40 50
380 390 400 410 420 430
pF1KE2 LHTDILKRGSEMDNNCSPTRKDFTEDTIPRTQIERRKTSLYFSSKYNKEALSPPRRKAFK
. . : . . . . : .:::::::::::::::::::::::::::::::::::
NP_001 SECNPLLQEPIASAQFGATAGTECQDTIPRTQIERRKTSLYFSSKYNKEALSPPRRKAFK
60 70 80 90 100 110
440 450 460 470 480 490
pF1KE2 KWTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KWTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADW
120 130 140 150 160 170
500 510 520 530 540 550
pF1KE2 RDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIFCVNEWKQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIFCVNEWKQV
180 190 200 210 220 230
560 570
pF1KE2 HPEDHKLNKYHDWLWENHEKLSLS
::::::::::::::::::::::::
NP_001 HPEDHKLNKYHDWLWENHEKLSLS
240 250 260
>>XP_011511570 (OMIM: 603574) PREDICTED: methyl-CpG-bind (185 aa)
initn: 1253 init1: 1253 opt: 1253 Z-score: 1319.8 bits: 252.5 E(85289): 8.9e-67
Smith-Waterman score: 1253; 98.9% identity (100.0% similar) in 182 aa overlap (393-574:4-185)
370 380 390 400 410 420
pF1KE2 EVVERKEHLHTDILKRGSEMDNNCSPTRKDFTEDTIPRTQIERRKTSLYFSSKYNKEALS
..::::::::::::::::::::::::::::
XP_011 MCTLSEDTIPRTQIERRKTSLYFSSKYNKEALS
10 20 30
430 440 450 460 470 480
pF1KE2 PPRRKAFKKWTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPRRKAFKKWTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSA
40 50 60 70 80 90
490 500 510 520 530 540
pF1KE2 EVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIF
100 110 120 130 140 150
550 560 570
pF1KE2 CVNEWKQVHPEDHKLNKYHDWLWENHEKLSLS
::::::::::::::::::::::::::::::::
XP_011 CVNEWKQVHPEDHKLNKYHDWLWENHEKLSLS
160 170 180
>>XP_011529468 (OMIM: 300005,300055,300260,300496,300673 (393 aa)
initn: 276 init1: 249 opt: 258 Z-score: 275.9 bits: 60.4 E(85289): 1.3e-08
Smith-Waterman score: 258; 55.7% identity (75.7% similar) in 70 aa overlap (85-154:6-74)
60 70 80 90 100 110
pF1KE2 IKRSSECNPLLQEPIASAQFGATAGTECRKSVPCGWERVVKQRLFGKTAGRFDVYFISPQ
..: :: : .::: :..::..:::.:.::
XP_011 MYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQ
10 20 30
120 130 140 150 160 170
pF1KE2 GLKFRSKSSLANYLHKNGETSLKPEDFDFTVLSKRGIKSRYKDCSMAALTSHLQNQSNNS
: :::: : :..: :.::: :.:::::: . :: ::
XP_011 GKAFRSKVELIAYFEKVGDTSLDPNDFDFTV-TGRGSPSRREQKPPKKPKSPKAPGTGRG
40 50 60 70 80 90
180 190 200 210 220 230
pF1KE2 NWNLRTRSKCKKDVFMPPSSSSELQESRGLSNFTSTHLLLKEDEGVDDVNFRKVRKPKGK
XP_011 RGRPKGSGTTRPKAATSEGVQVKRVLEKSPGKLLVKMPFQTSPGGKAEGGGATTSTQVMV
100 110 120 130 140 150
>>NP_001303266 (OMIM: 300005,300055,300260,300496,300673 (393 aa)
initn: 276 init1: 249 opt: 258 Z-score: 275.9 bits: 60.4 E(85289): 1.3e-08
Smith-Waterman score: 258; 55.7% identity (75.7% similar) in 70 aa overlap (85-154:6-74)
60 70 80 90 100 110
pF1KE2 IKRSSECNPLLQEPIASAQFGATAGTECRKSVPCGWERVVKQRLFGKTAGRFDVYFISPQ
..: :: : .::: :..::..:::.:.::
NP_001 MYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQ
10 20 30
120 130 140 150 160 170
pF1KE2 GLKFRSKSSLANYLHKNGETSLKPEDFDFTVLSKRGIKSRYKDCSMAALTSHLQNQSNNS
: :::: : :..: :.::: :.:::::: . :: ::
NP_001 GKAFRSKVELIAYFEKVGDTSLDPNDFDFTV-TGRGSPSRREQKPPKKPKSPKAPGTGRG
40 50 60 70 80 90
180 190 200 210 220 230
pF1KE2 NWNLRTRSKCKKDVFMPPSSSSELQESRGLSNFTSTHLLLKEDEGVDDVNFRKVRKPKGK
NP_001 RGRPKGSGTTRPKAATSEGVQVKRVLEKSPGKLLVKMPFQTSPGGKAEGGGATTSTQVMV
100 110 120 130 140 150
>>XP_016885022 (OMIM: 300005,300055,300260,300496,300673 (393 aa)
initn: 276 init1: 249 opt: 258 Z-score: 275.9 bits: 60.4 E(85289): 1.3e-08
Smith-Waterman score: 258; 55.7% identity (75.7% similar) in 70 aa overlap (85-154:6-74)
60 70 80 90 100 110
pF1KE2 IKRSSECNPLLQEPIASAQFGATAGTECRKSVPCGWERVVKQRLFGKTAGRFDVYFISPQ
..: :: : .::: :..::..:::.:.::
XP_016 MYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQ
10 20 30
120 130 140 150 160 170
pF1KE2 GLKFRSKSSLANYLHKNGETSLKPEDFDFTVLSKRGIKSRYKDCSMAALTSHLQNQSNNS
: :::: : :..: :.::: :.:::::: . :: ::
XP_016 GKAFRSKVELIAYFEKVGDTSLDPNDFDFTV-TGRGSPSRREQKPPKKPKSPKAPGTGRG
40 50 60 70 80 90
180 190 200 210 220 230
pF1KE2 NWNLRTRSKCKKDVFMPPSSSSELQESRGLSNFTSTHLLLKEDEGVDDVNFRKVRKPKGK
XP_016 RGRPKGSGTTRPKAATSEGVQVKRVLEKSPGKLLVKMPFQTSPGGKAEGGGATTSTQVMV
100 110 120 130 140 150
>>XP_005274739 (OMIM: 300005,300055,300260,300496,300673 (393 aa)
initn: 276 init1: 249 opt: 258 Z-score: 275.9 bits: 60.4 E(85289): 1.3e-08
Smith-Waterman score: 258; 55.7% identity (75.7% similar) in 70 aa overlap (85-154:6-74)
60 70 80 90 100 110
pF1KE2 IKRSSECNPLLQEPIASAQFGATAGTECRKSVPCGWERVVKQRLFGKTAGRFDVYFISPQ
..: :: : .::: :..::..:::.:.::
XP_005 MYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQ
10 20 30
120 130 140 150 160 170
pF1KE2 GLKFRSKSSLANYLHKNGETSLKPEDFDFTVLSKRGIKSRYKDCSMAALTSHLQNQSNNS
: :::: : :..: :.::: :.:::::: . :: ::
XP_005 GKAFRSKVELIAYFEKVGDTSLDPNDFDFTV-TGRGSPSRREQKPPKKPKSPKAPGTGRG
40 50 60 70 80 90
180 190 200 210 220 230
pF1KE2 NWNLRTRSKCKKDVFMPPSSSSELQESRGLSNFTSTHLLLKEDEGVDDVNFRKVRKPKGK
XP_005 RGRPKGSGTTRPKAATSEGVQVKRVLEKSPGKLLVKMPFQTSPGGKAEGGGATTSTQVMV
100 110 120 130 140 150
574 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 16:16:52 2016 done: Mon Nov 7 16:16:54 2016
Total Scan time: 10.420 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]