FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2190, 531 aa 1>>>pF1KE2190 531 - 531 aa - 531 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.4777+/-0.000392; mu= 9.3745+/- 0.025 mean_var=134.7830+/-28.352, 0's: 0 Z-trim(116.2): 12 B-trim: 1739 in 2/51 Lambda= 0.110473 statistics sampled from 27222 (27231) to 27222 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.319), width: 16 Scan time: 10.370 The best scores are: opt bits E(85289) NP_078805 (OMIM: 607393,608266) parafibromin [Homo ( 531) 3504 570.1 5.9e-162 XP_006711600 (OMIM: 607393,608266) PREDICTED: para ( 347) 2073 341.9 1.9e-93 >>NP_078805 (OMIM: 607393,608266) parafibromin [Homo sap (531 aa) initn: 3504 init1: 3504 opt: 3504 Z-score: 3028.6 bits: 570.1 E(85289): 5.9e-162 Smith-Waterman score: 3504; 100.0% identity (100.0% similar) in 531 aa overlap (1-531:1-531) 10 20 30 40 50 60 pF1KE2 MADVLSVLRQYNIQKKEIVVKGDEVIFGEFSWPKNVKTNYVVWGTGKEGQPREYYTLDSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_078 MADVLSVLRQYNIQKKEIVVKGDEVIFGEFSWPKNVKTNYVVWGTGKEGQPREYYTLDSI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 LFLLNNVHLSHPVYVRRAATENIPVVRRPDRKDLLGYLNGEASTSASIDRSAPLEIGLQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_078 LFLLNNVHLSHPVYVRRAATENIPVVRRPDRKDLLGYLNGEASTSASIDRSAPLEIGLQR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 STQVKRAADEVLAEAKKPRIEDEECVRLDKERLAARLEGHKEGIVQTEQIRSLSEAMSVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_078 STQVKRAADEVLAEAKKPRIEDEECVRLDKERLAARLEGHKEGIVQTEQIRSLSEAMSVE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 KIAAIKAKIMAKKRSTIKTDLDDDITALKQRSFVDAEVDVTRDIVSRERVWRTRTTILQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_078 KIAAIKAKIMAKKRSTIKTDLDDDITALKQRSFVDAEVDVTRDIVSRERVWRTRTTILQS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 TGKNFSKNIFAILQSVKAREEGRAPEQRPAPNAAPVDPTLRTKQPIPAAYNRYDQERFKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_078 TGKNFSKNIFAILQSVKAREEGRAPEQRPAPNAAPVDPTLRTKQPIPAAYNRYDQERFKG 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 KEETEGFKIDTMGTYHGMTLKSVTEGASARKTQTPAAQPVPRPVSQARPPPNQKKGSRTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_078 KEETEGFKIDTMGTYHGMTLKSVTEGASARKTQTPAAQPVPRPVSQARPPPNQKKGSRTP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 IIIIPAATTSLITMLNAKDLLQDLKFVPSDEKKKQGCQRENETLIQRRKDQMQPGGTAIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_078 IIIIPAATTSLITMLNAKDLLQDLKFVPSDEKKKQGCQRENETLIQRRKDQMQPGGTAIS 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE2 VTVPYRVVDQPLKLMPQDWDRVVAVFVQGPAWQFKGWPWLLPDGSPVDIFAKIKAFHLKY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_078 VTVPYRVVDQPLKLMPQDWDRVVAVFVQGPAWQFKGWPWLLPDGSPVDIFAKIKAFHLKY 430 440 450 460 470 480 490 500 510 520 530 pF1KE2 DEVRLDPNVQKWDVTVLELSYHKRHLDRPVFLRFWETLDRYMVKHKSHLRF ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_078 DEVRLDPNVQKWDVTVLELSYHKRHLDRPVFLRFWETLDRYMVKHKSHLRF 490 500 510 520 530 >>XP_006711600 (OMIM: 607393,608266) PREDICTED: parafibr (347 aa) initn: 2073 init1: 2073 opt: 2073 Z-score: 1798.7 bits: 341.9 E(85289): 1.9e-93 Smith-Waterman score: 2073; 100.0% identity (100.0% similar) in 324 aa overlap (1-324:1-324) 10 20 30 40 50 60 pF1KE2 MADVLSVLRQYNIQKKEIVVKGDEVIFGEFSWPKNVKTNYVVWGTGKEGQPREYYTLDSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MADVLSVLRQYNIQKKEIVVKGDEVIFGEFSWPKNVKTNYVVWGTGKEGQPREYYTLDSI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 LFLLNNVHLSHPVYVRRAATENIPVVRRPDRKDLLGYLNGEASTSASIDRSAPLEIGLQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 LFLLNNVHLSHPVYVRRAATENIPVVRRPDRKDLLGYLNGEASTSASIDRSAPLEIGLQR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 STQVKRAADEVLAEAKKPRIEDEECVRLDKERLAARLEGHKEGIVQTEQIRSLSEAMSVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 STQVKRAADEVLAEAKKPRIEDEECVRLDKERLAARLEGHKEGIVQTEQIRSLSEAMSVE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 KIAAIKAKIMAKKRSTIKTDLDDDITALKQRSFVDAEVDVTRDIVSRERVWRTRTTILQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 KIAAIKAKIMAKKRSTIKTDLDDDITALKQRSFVDAEVDVTRDIVSRERVWRTRTTILQS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 TGKNFSKNIFAILQSVKAREEGRAPEQRPAPNAAPVDPTLRTKQPIPAAYNRYDQERFKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 TGKNFSKNIFAILQSVKAREEGRAPEQRPAPNAAPVDPTLRTKQPIPAAYNRYDQERFKG 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 KEETEGFKIDTMGTYHGMTLKSVTEGASARKTQTPAAQPVPRPVSQARPPPNQKKGSRTP :::::::::::::::::::::::: XP_006 KEETEGFKIDTMGTYHGMTLKSVTVFFLMDVSFSVVLLVFPASHVPL 310 320 330 340 531 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 18:45:37 2016 done: Sun Nov 6 18:45:39 2016 Total Scan time: 10.370 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]