Result of FASTA (omim) for
pFN21AE2174
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2174, 280 aa
1>>>pF1KE2174 280 - 280 aa - 280 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4099+/-0.000304; mu= 11.9305+/- 0.019
mean_var=121.0129+/-23.148, 0's: 0 Z-trim(119.6): 4 B-trim: 0 in 0/56
Lambda= 0.116589
statistics sampled from 33863 (33866) to 33863 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.397), width: 16
Scan time: 8.150
The best scores are: opt bits E(85289)
XP_005258885 (OMIM: 613478) PREDICTED: coiled-coil ( 280) 1838 319.5 4.4e-87
XP_005258884 (OMIM: 613478) PREDICTED: coiled-coil ( 280) 1838 319.5 4.4e-87
NP_037433 (OMIM: 613478) coiled-coil domain-contai ( 280) 1838 319.5 4.4e-87
>>XP_005258885 (OMIM: 613478) PREDICTED: coiled-coil dom (280 aa)
initn: 1838 init1: 1838 opt: 1838 Z-score: 1684.3 bits: 319.5 E(85289): 4.4e-87
Smith-Waterman score: 1838; 100.0% identity (100.0% similar) in 280 aa overlap (1-280:1-280)
10 20 30 40 50 60
pF1KE2 MNDRSSRRRTMKDDETFEISIPFDEAPHLDPQIFYSLSPSRRNFEEPPEAASSALALMNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MNDRSSRRRTMKDDETFEISIPFDEAPHLDPQIFYSLSPSRRNFEEPPEAASSALALMNS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 VKTQLHMALERNSWLQKRIEDLEEERDFLRCQLDKFISSARMEAEDHCRMKPGPRRMEGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VKTQLHMALERNSWLQKRIEDLEEERDFLRCQLDKFISSARMEAEDHCRMKPGPRRMEGD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SRGGAGGEASDPESAASSLSGASEEGSASERRRQKQKGGASRRRFGKPKARERQRVKDAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SRGGAGGEASDPESAASSLSGASEEGSASERRRQKQKGGASRRRFGKPKARERQRVKDAD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GVLCRYKKILGTFQKLKSMSRAFEHHRVDRNTVALTTPIAELLIVAPEKLAEVGEFDPSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GVLCRYKKILGTFQKLKSMSRAFEHHRVDRNTVALTTPIAELLIVAPEKLAEVGEFDPSK
190 200 210 220 230 240
250 260 270 280
pF1KE2 ERLLEYSRRCFLALDDETLKKVQALKKSKLLLPITYRFKR
::::::::::::::::::::::::::::::::::::::::
XP_005 ERLLEYSRRCFLALDDETLKKVQALKKSKLLLPITYRFKR
250 260 270 280
>>XP_005258884 (OMIM: 613478) PREDICTED: coiled-coil dom (280 aa)
initn: 1838 init1: 1838 opt: 1838 Z-score: 1684.3 bits: 319.5 E(85289): 4.4e-87
Smith-Waterman score: 1838; 100.0% identity (100.0% similar) in 280 aa overlap (1-280:1-280)
10 20 30 40 50 60
pF1KE2 MNDRSSRRRTMKDDETFEISIPFDEAPHLDPQIFYSLSPSRRNFEEPPEAASSALALMNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MNDRSSRRRTMKDDETFEISIPFDEAPHLDPQIFYSLSPSRRNFEEPPEAASSALALMNS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 VKTQLHMALERNSWLQKRIEDLEEERDFLRCQLDKFISSARMEAEDHCRMKPGPRRMEGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VKTQLHMALERNSWLQKRIEDLEEERDFLRCQLDKFISSARMEAEDHCRMKPGPRRMEGD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SRGGAGGEASDPESAASSLSGASEEGSASERRRQKQKGGASRRRFGKPKARERQRVKDAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SRGGAGGEASDPESAASSLSGASEEGSASERRRQKQKGGASRRRFGKPKARERQRVKDAD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GVLCRYKKILGTFQKLKSMSRAFEHHRVDRNTVALTTPIAELLIVAPEKLAEVGEFDPSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GVLCRYKKILGTFQKLKSMSRAFEHHRVDRNTVALTTPIAELLIVAPEKLAEVGEFDPSK
190 200 210 220 230 240
250 260 270 280
pF1KE2 ERLLEYSRRCFLALDDETLKKVQALKKSKLLLPITYRFKR
::::::::::::::::::::::::::::::::::::::::
XP_005 ERLLEYSRRCFLALDDETLKKVQALKKSKLLLPITYRFKR
250 260 270 280
>>NP_037433 (OMIM: 613478) coiled-coil domain-containing (280 aa)
initn: 1838 init1: 1838 opt: 1838 Z-score: 1684.3 bits: 319.5 E(85289): 4.4e-87
Smith-Waterman score: 1838; 100.0% identity (100.0% similar) in 280 aa overlap (1-280:1-280)
10 20 30 40 50 60
pF1KE2 MNDRSSRRRTMKDDETFEISIPFDEAPHLDPQIFYSLSPSRRNFEEPPEAASSALALMNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 MNDRSSRRRTMKDDETFEISIPFDEAPHLDPQIFYSLSPSRRNFEEPPEAASSALALMNS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 VKTQLHMALERNSWLQKRIEDLEEERDFLRCQLDKFISSARMEAEDHCRMKPGPRRMEGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 VKTQLHMALERNSWLQKRIEDLEEERDFLRCQLDKFISSARMEAEDHCRMKPGPRRMEGD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 SRGGAGGEASDPESAASSLSGASEEGSASERRRQKQKGGASRRRFGKPKARERQRVKDAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 SRGGAGGEASDPESAASSLSGASEEGSASERRRQKQKGGASRRRFGKPKARERQRVKDAD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 GVLCRYKKILGTFQKLKSMSRAFEHHRVDRNTVALTTPIAELLIVAPEKLAEVGEFDPSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 GVLCRYKKILGTFQKLKSMSRAFEHHRVDRNTVALTTPIAELLIVAPEKLAEVGEFDPSK
190 200 210 220 230 240
250 260 270 280
pF1KE2 ERLLEYSRRCFLALDDETLKKVQALKKSKLLLPITYRFKR
::::::::::::::::::::::::::::::::::::::::
NP_037 ERLLEYSRRCFLALDDETLKKVQALKKSKLLLPITYRFKR
250 260 270 280
280 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 12:08:59 2016 done: Sun Nov 6 12:09:00 2016
Total Scan time: 8.150 Total Display time: -0.050
Function used was FASTA [36.3.4 Apr, 2011]