FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2174, 280 aa
  1>>>pF1KE2174 280 - 280 aa - 280 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3345+/-0.00075; mu= 12.4699+/- 0.045
 mean_var=116.7130+/-22.679, 0's: 0 Z-trim(112.4): 6  B-trim: 9 in 1/52
 Lambda= 0.118717
 statistics sampled from 13194 (13195) to 13194 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.405), width:  16
 Scan time:  2.610

The best scores are:                                      opt bits E(32554)
CCDS33118.1 CCDC106 gene_id:29903|Hs108|chr19      ( 280) 1838 324.9 3.9e-89


>>CCDS33118.1 CCDC106 gene_id:29903|Hs108|chr19           (280 aa)
 initn: 1838 init1: 1838 opt: 1838  Z-score: 1713.8  bits: 324.9 E(32554): 3.9e-89
Smith-Waterman score: 1838; 100.0% identity (100.0% similar) in 280 aa overlap (1-280:1-280)

               10        20        30        40        50        60
pF1KE2 MNDRSSRRRTMKDDETFEISIPFDEAPHLDPQIFYSLSPSRRNFEEPPEAASSALALMNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MNDRSSRRRTMKDDETFEISIPFDEAPHLDPQIFYSLSPSRRNFEEPPEAASSALALMNS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 VKTQLHMALERNSWLQKRIEDLEEERDFLRCQLDKFISSARMEAEDHCRMKPGPRRMEGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VKTQLHMALERNSWLQKRIEDLEEERDFLRCQLDKFISSARMEAEDHCRMKPGPRRMEGD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 SRGGAGGEASDPESAASSLSGASEEGSASERRRQKQKGGASRRRFGKPKARERQRVKDAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SRGGAGGEASDPESAASSLSGASEEGSASERRRQKQKGGASRRRFGKPKARERQRVKDAD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 GVLCRYKKILGTFQKLKSMSRAFEHHRVDRNTVALTTPIAELLIVAPEKLAEVGEFDPSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GVLCRYKKILGTFQKLKSMSRAFEHHRVDRNTVALTTPIAELLIVAPEKLAEVGEFDPSK
              190       200       210       220       230       240

              250       260       270       280
pF1KE2 ERLLEYSRRCFLALDDETLKKVQALKKSKLLLPITYRFKR
       ::::::::::::::::::::::::::::::::::::::::
CCDS33 ERLLEYSRRCFLALDDETLKKVQALKKSKLLLPITYRFKR
              250       260       270       280




280 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:08:58 2016 done: Sun Nov  6 12:08:59 2016
 Total Scan time:  2.610 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]