FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2161, 121 aa
  1>>>pF1KE2161 121 - 121 aa - 121 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2815+/-0.000251; mu= 11.2857+/- 0.016
 mean_var=68.5133+/-13.595, 0's: 0 Z-trim(121.5): 2  B-trim: 0 in 0/55
 Lambda= 0.154948
 statistics sampled from 38234 (38236) to 38234 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.824), E-opt: 0.2 (0.448), width:  16
 Scan time:  5.260

The best scores are:                                      opt bits E(85289)
NP_037383 (OMIM: 162330,614839) tachykinin-3 isofo ( 121)  801 186.7 7.8e-48
NP_001171525 (OMIM: 162330,614839) tachykinin-3 is ( 103)  509 121.4 3.1e-28


>>NP_037383 (OMIM: 162330,614839) tachykinin-3 isoform 1  (121 aa)
 initn: 801 init1: 801 opt: 801  Z-score: 979.7  bits: 186.7 E(85289): 7.8e-48
Smith-Waterman score: 801; 100.0% identity (100.0% similar) in 121 aa overlap (1-121:1-121)

               10        20        30        40        50        60
pF1KE2 MRIMLLFTAILAFSLAQSFGAVCKEPQEEVVPGGGRSKRDPDLYQLLQRLFKSHSSLEGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 MRIMLLFTAILAFSLAQSFGAVCKEPQEEVVPGGGRSKRDPDLYQLLQRLFKSHSSLEGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 LKALSQASTDPKESTSPEKRDMHDFFVGLMGKRSVQPDSPTDVNQENVPSFGILKYPPRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 LKALSQASTDPKESTSPEKRDMHDFFVGLMGKRSVQPDSPTDVNQENVPSFGILKYPPRA
               70        80        90       100       110       120

        
pF1KE2 E
       :
NP_037 E
        

>>NP_001171525 (OMIM: 162330,614839) tachykinin-3 isofor  (103 aa)
 initn: 506 init1: 506 opt: 509  Z-score: 628.0  bits: 121.4 E(85289): 3.1e-28
Smith-Waterman score: 618; 84.3% identity (85.1% similar) in 121 aa overlap (1-121:1-103)

               10        20        30        40        50        60
pF1KE2 MRIMLLFTAILAFSLAQSFGAVCKEPQEEVVPGGGRSKRDPDLYQLLQRLFKSHSSLEGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRIMLLFTAILAFSLAQSFGAVCKEPQEEVVPGGGRSKRDPDLYQLLQRLFKSHSSLEGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 LKALSQASTDPKESTSPEKRDMHDFFVGLMGKRSVQPDSPTDVNQENVPSFGILKYPPRA
       :::::::::::::::::::.                  ::::::::::::::::::::::
NP_001 LKALSQASTDPKESTSPEKH------------------SPTDVNQENVPSFGILKYPPRA
               70        80                          90       100  

        
pF1KE2 E
       :
NP_001 E
        




121 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:24:21 2016 done: Sun Nov  6 22:24:22 2016
 Total Scan time:  5.260 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]