FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2148, 152 aa
  1>>>pF1KE2148 152 - 152 aa - 152 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0595+/-0.000349; mu= 13.8066+/- 0.022
 mean_var=70.3660+/-14.337, 0's: 0 Z-trim(114.2): 10  B-trim: 33 in 1/54
 Lambda= 0.152895
 statistics sampled from 23946 (23949) to 23946 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.281), width:  16
 Scan time:  5.060

The best scores are:                                      opt bits E(85289)
NP_072045 (OMIM: 180473) 40S ribosomal protein S18 ( 152)  995 228.0 4.6e-60


>>NP_072045 (OMIM: 180473) 40S ribosomal protein S18 [Ho  (152 aa)
 initn: 995 init1: 995 opt: 995  Z-score: 1199.3  bits: 228.0 E(85289): 4.6e-60
Smith-Waterman score: 995; 100.0% identity (100.0% similar) in 152 aa overlap (1-152:1-152)

               10        20        30        40        50        60
pF1KE2 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_072 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_072 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH
               70        80        90       100       110       120

              130       140       150  
pF1KE2 RGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK
       ::::::::::::::::::::::::::::::::
NP_072 RGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK
              130       140       150  




152 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 16:50:48 2016 done: Sun Nov  6 16:50:48 2016
 Total Scan time:  5.060 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]