FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2147, 124 aa
  1>>>pF1KE2147 124 - 124 aa - 124 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6024+/-0.000598; mu= 8.7988+/- 0.036
 mean_var=62.2765+/-12.878, 0's: 0 Z-trim(111.4): 9  B-trim: 0 in 0/52
 Lambda= 0.162522
 statistics sampled from 12379 (12382) to 12379 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.761), E-opt: 0.2 (0.38), width:  16
 Scan time:  1.640

The best scores are:                                      opt bits E(32554)
CCDS3866.1 NDUFS6 gene_id:4726|Hs108|chr5          ( 124)  858 208.9 6.5e-55


>>CCDS3866.1 NDUFS6 gene_id:4726|Hs108|chr5               (124 aa)
 initn: 858 init1: 858 opt: 858  Z-score: 1099.4  bits: 208.9 E(32554): 6.5e-55
Smith-Waterman score: 858; 100.0% identity (100.0% similar) in 124 aa overlap (1-124:1-124)

               10        20        30        40        50        60
pF1KE2 MAAAMTFCRLLNRCGEAARSLPLGARCFGVRVSPTGEKVTHTGQVYDDKDYRRIRFVGRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MAAAMTFCRLLNRCGEAARSLPLGARCFGVRVSPTGEKVTHTGQVYDDKDYRRIRFVGRQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 KEVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINLDKETKTGTCGYCGLQFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 KEVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINLDKETKTGTCGYCGLQFR
               70        80        90       100       110       120

           
pF1KE2 QHHH
       ::::
CCDS38 QHHH
           




124 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:54:23 2016 done: Mon Nov  7 15:54:23 2016
 Total Scan time:  1.640 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]